Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-11-09 | Extract PDH from result and construct URIs from thatfasta-subset-from-query | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-09 | Make resource link work for both portable data hashes and sample id | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-09 | Make it so "pangenome analysis" only runs collect-seqs. | Peter Amstutz | |
Will ensure that metadata is kept up to date. GFA isn't being generated. Will introduce new workflow that uses from_sparql to analyze a subset. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-09 | Rename schema param to metadataSchema | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-09 | Extract subset of the all-sequences fasta by running a sparql query. | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-08 | Uploaded UTHSC sequences | Pjotr Prins | |
2020-11-08 | UTHSC samples | Pjotr Prins | |
2020-11-07 | Tests: added SPARQL test | Pjotr Prins | |
2020-11-07 | Tests: add runner and frame for SPARQL | Pjotr Prins | |
2020-11-07 | RDF: use URIs | Pjotr Prins | |
2020-11-07 | Test: simplify and add regression test | Pjotr Prins | |
2020-11-07 | Fixed the License error (https!!) | Pjotr Prins | |
2020-11-07 | Running tests without network | Pjotr Prins | |
2020-11-07 | Added failing unit test: No matching triples found for predicate cc:License | Pjotr Prins | |
2020-11-06 | Add location | Pjotr Prins | |
2020-11-06 | Add country entries that miss coordinates | Pjotr Prins | |
2020-11-06 | Country trouble shooting | Pjotr Prins | |
2020-11-06 | Uploader script improvements | Pjotr Prins | |
2020-11-06 | Countries | Pjotr Prins | |
2020-11-06 | Using correct wikidata geo link | Pjotr Prins | |
2020-11-06 | Adding Tennessee items | Pjotr Prins | |
2020-11-06 | UTHSC upload info | Pjotr Prins | |
2020-11-06 | Working on upload | Pjotr Prins | |
2020-11-05 | Add 10 samples | Pjotr Prins | |
2020-11-05 | Added note | Pjotr Prins | |
2020-11-05 | Using 'DOCS' instead of 'BLOG' | Pjotr Prins | |
2020-11-05 | Updated API doc | Pjotr Prins | |
2020-11-04 | virtuoso-ose: install and settings | Pjotr Prins | |
2020-11-04 | fixed sequence_assembly_method field description | AndreaGuarracino | |
2020-11-04 | Test data set | Pjotr Prins | |
2020-10-30 | Adding some more wikidata locations | lltommy | |
2020-10-28 | Country information | Pjotr Prins | |
2020-10-28 | List by country and added to map | Pjotr Prins | |
2020-10-28 | Fix DEMO links | Pjotr Prins | |
2020-10-28 | Adding more metadata to resource uri | Pjotr Prins | |
2020-10-28 | Create permalink and some output | Pjotr Prins | |
2020-10-28 | Use Flask url_for to make relative routes work | Pjotr Prins | |
2020-10-28 | Fix CSS errors | Pjotr Prins | |
2020-10-27 | Commented in uploader main.py | Pjotr Prins | |
2020-10-27 | Updating docs | Pjotr Prins | |
2020-10-26 | Update blog | Pjotr Prins | |
2020-10-26 | Minor CSS for the map | Pjotr Prins | |
2020-10-26 | Improved map to show sequences in one view | Pjotr Prins | |
2020-10-26 | Adding upload metadata examples | Pjotr Prins | |
2020-10-26 | Textual updates | Pjotr Prins | |
2020-10-06 | Create .dockstore.yml | Michael R. Crusoe | |
2020-10-01 | sequence divergence to 5% for minimap2 in the FASTA quality control | AndreaGuarracino | |
2020-10-01 | show more information in the error messages | AndreaGuarracino | |
2020-09-29 | esr_samples script refactoring; added a reference of the esr_samples script ↵ | AndreaGuarracino | |
in the blog as an example of how to parse metadata | |||
2020-09-28 | new countries; updated genbank/sra scripts to manage more specimen sources | AndreaGuarracino | |