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2020-07-07Use minimap2 instead of clustalw for fasta QCPeter Amstutz
2020-07-05Add bh20-seq-analyzer --print-statusPeter Amstutz
2020-07-03A little more loggingPeter Amstutz
2020-07-03Add upload.cwlPeter Amstutz
2020-07-03Add --no-start-analysisPeter Amstutz
2020-07-03Add --skip-qc for faster batch importPeter Amstutz
2020-07-03Adding --skip-qcPeter Amstutz
2020-07-03Fix qc_fasta bug closing stream.Peter Amstutz
2020-07-03Improving genbank import workflowPeter Amstutz
2020-07-03Fix single arg uploadPeter Amstutz
2020-06-25Update labels.ttlLLTommy
2020-06-24Merge pull request #87 from AndreaGuarracino/patch-20LLTommy
2020-06-24Merge pull request #85 from AndreaGuarracino/patch-18LLTommy
2020-06-22very little readme for the scriptsAndrea Guarracino
2020-06-22added new script to prepare metadata of sra dataAndreaGuarracino
2020-06-22moved the genbank script in his specific directoryAndreaGuarracino
2020-06-22added new dictionary entriesAndreaGuarracino
2020-06-22little fix for specimen_sourceAndrea Guarracino
2020-06-22Adjust QC filter and relabel output sequence with sample_idPeter Amstutz
2020-06-22Merge pull request #86 from AndreaGuarracino/patch-19Peter Amstutz
2020-06-22new entries for the EBI samplesAndreaGuarracino
2020-06-22Better invalid sequence QC handlingPeter Amstutz
2020-06-22corrected the wrong entitiesAndrea Guarracino
2020-06-22Handle upload & assembly of gzipped, paired-end fastqPeter Amstutz
2020-06-18removed double sortingAndrea Guarracino
2020-06-18Merge pull request #84 from BonfaceKilz/masterPjotr Prins
2020-06-18fix(map): update fasta count keyBonfaceKilz
2020-06-18fix: show missing markersBonfaceKilz
2020-06-17Slighlty alter SPARQL query to truley sumarize locations for contients. Most ...lltommy
2020-06-17Merge pull request #83 from BonfaceKilz/feature/display-content-sequencesLLTommy
2020-06-17Add cluster marker groupBonfaceKilz
2020-06-17Move map logic to main.jsBonfaceKilz
2020-06-17Move js script to bottom of pageBonfaceKilz
2020-06-17Add styling to mapBonfaceKilz
2020-06-17Fix broken HTMLBonfaceKilz
2020-06-17Move leaflet CSS to the head sectionBonfaceKilz
2020-06-17Add section for map and add basic stylingBonfaceKilz
2020-06-17Add leaflet css and js libsBonfaceKilz
2020-06-17Remove literal json representation of mapBonfaceKilz
2020-06-16starting to include a maplltommy
2020-06-15Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-06-15Adding endpoints using grouping of continentslltommy
2020-06-15virtuoso: remove graph before updatePjotr Prins
2020-06-14Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-06-14Tried to make a start with the 'demo' part, table works, drilling down notlltommy
2020-06-12Merge pull request #82 from AndreaGuarracino/patch-17LLTommy
2020-06-12Adding endpoint getCountByGPS which could be used to draw a maplltommy
2020-06-12species dictionaryAndrea Guarracino
2020-06-12species are managed in another dictionary, try-catch added to avoid unexpecte...Andrea Guarracino
2020-06-12Fix buttons, close #71Pjotr Prins
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