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2020-07-17Remove extra exclamation markPjotr Prins
2020-07-16Report similarity == 0•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-16Merge pull request #98 from arvados/analysis-refactor•••Analysis refactorPeter Amstutz
2020-07-16Add "validated" and "running workflows" tables to status•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> analysis-refactorPeter Amstutz
2020-07-16Improve uploader reporting.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-16Cleanup script also clears errors for revalidate•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-16Improve upload form layout.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-16Catch exceptions•••Add script to cleanup bad uploads. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-16Make license optional•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-16Make license optional for now•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-16Refactor analysis code into a class•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-16Blog: workflowsPjotr Prins
2020-07-16Remove extra exclamation markPjotr Prins
2020-07-16Add edit link for download pagePjotr Prins
2020-07-16Add edit icon to text on github•••Closes #76 Pjotr Prins
2020-07-16Change CSS to make BLOG more readablePjotr Prins
2020-07-16Add reference to FAIRPjotr Prins
2020-07-16Addes ESR logo and cropped CWL logoPjotr Prins
2020-07-16Make license optional for nowPjotr Prins
2020-07-15License RDFPjotr Prins
2020-07-15Add RDF outputPjotr Prins
2020-07-15Merge pull request #95 from AndreaGuarracino/patch-1•••little scripts improvements, metadata update for SRA samplesPjotr Prins
2020-07-15Web: add license to input formPjotr Prins
2020-07-15Load metadata locally without pkg_resourcesPjotr Prins
2020-07-15Update Guix installPjotr Prins
2020-07-15Merge pull request #97 from pjotrp/master•••Add license metadata to recordPjotr Prins
2020-07-14Started documenting EBI submissionPjotr Prins
2020-07-13Add ontology and schema for license information. For review.Pjotr Prins
2020-07-12added a suffix to distinguish which script created the error/warning filesAndreaGuarracino
2020-07-12Generate About pagePjotr Prins
2020-07-12Docs: started on metadata modificationPjotr Prins
2020-07-12CounterDBPjotr Prins
2020-07-12About page: add Andrea and Erik; add CC0 license linkPjotr Prins
2020-07-12Remove duplicate counterPjotr Prins
2020-07-12Remove duplicate counterPjotr Prins
2020-07-12Remove duplicate counterPjotr Prins
2020-07-10metadata with missing host_species are not createdAndreaGuarracino
2020-07-10an output file is created with the accessions for which no YAML file is createdAndreaGuarracino
2020-07-10updated metadata sourceAndreaGuarracino
2020-07-10other term for Homo sapiens (for SRA samples)Andrea Guarracino
2020-07-09Skip certificate check - this was upstreamed in Arvados, so we can remove laterPjotr Prins
2020-07-09Merge pull request #93 from AndreaGuarracino/patch-22•••fixed bug that lead to invalid sample_sequencing_technology valuesPjotr Prins
2020-07-09fixed bug that lead to invalid sample_sequencing_technology valuesAndrea Guarracino
2020-07-08Adding missing GPS coordinates et alllltommy
2020-07-08Try to fix lab_address wrong predicate, fix submitter shape on the way and ho...lltommy
2020-07-08Merge pull request #92 from arvados/upload-download-status•••Split upload tab. Add upload status tab. Also a bunch of QC and uploader improvements.Peter Amstutz
2020-07-08Give uploader an option to trust local validation (for batch imports)•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> upload-download-statusPeter Amstutz
2020-07-08Uploader checks for duplicatesPeter Amstutz
2020-07-08Avoid redundant loading of schemaPeter Amstutz
2020-07-08Add --revalidate and fix checking/updating properties.Peter Amstutz
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