index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
Age
Commit message (
Expand
)
Author
2020-05-05
preserve the directory layout of segmentation.py
Michael R. Crusoe
2020-05-05
move some tools into the shared repo
Michael R. Crusoe
2020-05-04
Sort input to hopefully get container reuse
Peter Amstutz
2020-05-04
bump jerven/spodgi image to 0.0.6
Peter Amstutz
2020-05-04
Remove debug flag from workflow submit
Peter Amstutz
2020-05-04
add pangenome browser prep
Michael R. Crusoe
2020-05-04
Increase RAM for minimap2
Peter Amstutz
2020-05-03
Set a RAM requirement on odgi_to_rdf to influence it to run on c5
Peter Amstutz
2020-05-01
Set verison tag on spodgi container image
Peter Amstutz
2020-04-30
Merge pull request #47 from AndreaGuarracino/patch-15
Peter Amstutz
2020-04-30
fixed UO_0000036 for year
Andrea Guarracino
2020-04-30
Add py-dateutil to dependencies.
Peter Amstutz
2020-04-30
Handle running in a container with no username
Peter Amstutz
2020-04-30
Last addition/edits to the meta data schema
lltommy
2020-04-30
Merge pull request #41 from AndreaGuarracino/patch-14
LLTommy
2020-04-30
Import script fixes
Peter Amstutz
2020-04-30
Wrap import script to run as a workflow
Peter Amstutz
2020-04-29
Fix description content type for PyPi
Peter Amstutz
2020-04-29
Use subprocess invocation is backwards compatible with Python 3.5
Peter Amstutz
2020-04-29
Add reference
Peter Amstutz
2020-04-29
the date is now handled more formally
Andrea Guarracino
2020-04-29
fixing JS due to name changes so the demo works again
lltommy
2020-04-29
Reverting country list back, something went wrong there
lltommy
2020-04-29
Merge pull request #40 from AndreaGuarracino/patch-13
LLTommy
2020-04-28
updated to manage list fields and added new control on nasopharyngeal/throat ...
Andrea Guarracino
2020-04-28
Updated with new terms
Andrea Guarracino
2020-04-28
Updated with new terms
Andrea Guarracino
2020-04-28
Updated - 1731 IDs - 2020/04/28
Andrea Guarracino
2020-04-28
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-04-28
Decision to settle for float instead of integers for the coverage
lltommy
2020-04-28
Update spodgi docker image
Peter Amstutz
2020-04-28
Call clustalw to compare sequence to reference
Peter Amstutz
2020-04-28
Whatever happend to the minimal metadata, I restored it
lltommy
2020-04-28
Adding field 'publication' to the maximum example
lltommy
2020-04-28
Changes to the structure - we use lists now instead of strings where it makes...
lltommy
2020-04-26
Add enrichment vocabularies to git
lltommy
2020-04-26
Pushing some new functions, rename some old ones
lltommy
2020-04-26
Adding a function, correcting some variable names
lltommy
2020-04-26
Updating dics
lltommy
2020-04-26
Merge pull request #39 from BonfaceKilz/feature/display-results-of-api-consum...
LLTommy
2020-04-26
Merge from remote branch into feature/display-results-of-api-consumption
BonfaceKilz
2020-04-26
Update styles to match suggested mockup
BonfaceKilz
2020-04-26
Display the output of the queries as prettified JSON for now
BonfaceKilz
2020-04-26
Jsonify response and pick the values
BonfaceKilz
2020-04-26
Add basic structure for interacting with the API
BonfaceKilz
2020-04-26
Remove unnecessary JS
BonfaceKilz
2020-04-26
Put JS code in its own JS file
BonfaceKilz
2020-04-26
Reposition sponsor logo at the bottom
BonfaceKilz
2020-04-26
Put CSS code into it's own separate CSS file
BonfaceKilz
2020-04-26
Wrap extra flags to cater for non-bash terminals
BonfaceKilz
[prev]
[next]