index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-07-16
Add "validated" and "running workflows" tables to status
analysis-refactor
Peter Amstutz
2020-07-16
Improve uploader reporting.
Peter Amstutz
2020-07-16
Cleanup script also clears errors for revalidate
Peter Amstutz
2020-07-16
Improve upload form layout.
Peter Amstutz
2020-07-16
Catch exceptions
Peter Amstutz
2020-07-16
Make license optional
Peter Amstutz
2020-07-16
Make license optional for now
Peter Amstutz
2020-07-16
Refactor analysis code into a class
Peter Amstutz
2020-07-16
Blog: workflows
Pjotr Prins
2020-07-16
Remove extra exclamation mark
Pjotr Prins
2020-07-16
Add edit link for download page
Pjotr Prins
2020-07-16
Add edit icon to text on github
Pjotr Prins
2020-07-16
Change CSS to make BLOG more readable
Pjotr Prins
2020-07-16
Add reference to FAIR
Pjotr Prins
2020-07-16
Addes ESR logo and cropped CWL logo
Pjotr Prins
2020-07-16
Make license optional for now
Pjotr Prins
2020-07-15
License RDF
Pjotr Prins
2020-07-15
Add RDF output
Pjotr Prins
2020-07-15
Merge pull request #95 from AndreaGuarracino/patch-1
Pjotr Prins
2020-07-15
Web: add license to input form
Pjotr Prins
2020-07-15
Load metadata locally without pkg_resources
Pjotr Prins
2020-07-15
Update Guix install
Pjotr Prins
2020-07-15
Merge pull request #97 from pjotrp/master
Pjotr Prins
2020-07-14
Started documenting EBI submission
Pjotr Prins
2020-07-13
Add ontology and schema for license information. For review.
Pjotr Prins
2020-07-12
added a suffix to distinguish which script created the error/warning files
AndreaGuarracino
2020-07-12
Generate About page
Pjotr Prins
2020-07-12
Docs: started on metadata modification
Pjotr Prins
2020-07-12
CounterDB
Pjotr Prins
2020-07-12
About page: add Andrea and Erik; add CC0 license link
Pjotr Prins
2020-07-12
Remove duplicate counter
Pjotr Prins
2020-07-12
Remove duplicate counter
Pjotr Prins
2020-07-12
Remove duplicate counter
Pjotr Prins
2020-07-10
metadata with missing host_species are not created
AndreaGuarracino
2020-07-10
an output file is created with the accessions for which no YAML file is created
AndreaGuarracino
2020-07-10
updated metadata source
AndreaGuarracino
2020-07-10
other term for Homo sapiens (for SRA samples)
Andrea Guarracino
2020-07-09
Skip certificate check - this was upstreamed in Arvados, so we can remove later
Pjotr Prins
2020-07-09
Merge pull request #93 from AndreaGuarracino/patch-22
Pjotr Prins
2020-07-09
fixed bug that lead to invalid sample_sequencing_technology values
Andrea Guarracino
2020-07-08
Adding missing GPS coordinates et all
lltommy
2020-07-08
Try to fix lab_address wrong predicate, fix submitter shape on the way and ho...
lltommy
2020-07-08
Merge pull request #92 from arvados/upload-download-status
Peter Amstutz
2020-07-08
Give uploader an option to trust local validation (for batch imports)
upload-download-status
Peter Amstutz
2020-07-08
Uploader checks for duplicates
Peter Amstutz
2020-07-08
Avoid redundant loading of schema
Peter Amstutz
2020-07-08
Add --revalidate and fix checking/updating properties.
Peter Amstutz
2020-07-08
Hack in a valid-uri check
Peter Amstutz
2020-07-08
Get count from arvados
Peter Amstutz
2020-07-08
Fetch status as anonymous user
Peter Amstutz
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