bh20-seq-resource - Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

Age	Commit message (Expand)	Author
2020-11-14	added a check on host_age	AndreaGuarracino
2020-11-14	check empty strings	AndreaGuarracino
2020-11-14	SPARQL playground: additional examples	lltommy
2020-11-14	SPARQLplayground: Adding additional example	lltommy
2020-11-14	Adding an additional example to the SPARQL playground	lltommy
2020-11-13	fix check date sra script	AndreaGuarracino
2020-11-13	generation of dates a little more robust	AndreaGuarracino
2020-11-13	to not create YAML files with date before 2019 December	AndreaGuarracino
2020-11-13	there can be two specimen terms	AndreaGuarracino
2020-11-13	Initial commit: SPARQL playground, which replaces the demo page. Some queries...	lltommy
2020-11-13	Yaml and ShEx changes	lltommy
2020-11-13	fix in the ids to consider	AndreaGuarracino
2020-11-13	added ids-to-consider option to the NCBI script	AndreaGuarracino
2020-11-12	added closed shapes	AndreaGuarracino
2020-11-12	added missing _type: "@id" to the assembly_method field in the schema	AndreaGuarracino
2020-11-12	managed the assembly_method in the scripts, doc, and the example templates	AndreaGuarracino
2020-11-12	updated alignment_protocol field in the script, doc, and the example templates	AndreaGuarracino
2020-11-12	Trying to fix the submitter shape, shex and yaml	lltommy
2020-11-12	Proposed new technology shape/yaml structure	lltommy
2020-11-11	Support uploading new metadata only	Peter Amstutz
2020-11-11	Merge branch 'master' of https://github.com/arvados/bh20-seq-resource	lltommy
2020-11-11	Adding GPS coordinates and contitent membership for Memphis and Canada	lltommy
2020-11-11	Make collect-seqs skip bad inputs.	Peter Amstutz
2020-11-11	Documenting and QC of YAML. Some conflicts discovered that need review	lltommy
2020-11-11	Fix resolving permalinks such as http://covid19.genenetwork.org/resource/MT32...	Pjotr Prins
2020-11-11	Notes	Pjotr Prins
2020-11-11	Conflict in guix-deploy	Pjotr Prins
2020-11-11	Deploy	PubSeq webserver
2020-11-11	Deployment	Pjotr Prins
2020-11-11	Move files to correct folder	lltommy
2020-11-11	Merge branch 'master' of https://github.com/arvados/bh20-seq-resource	lltommy
2020-11-11	Adding covid death and covid cases per country as additional background infor...	lltommy
2020-11-11	create_sra_metadata script doesn't trick the quality control about missing da...	AndreaGuarracino
2020-11-11	Merge branch 'master' of https://github.com/arvados/bh20-seq-resource	lltommy
2020-11-11	restricting specimen_source to obo:NCIT which would have prevented the ncbi t...	lltommy
2020-11-10	Valid uploads with sequence_label in PubSeq replaces old one.	Peter Amstutz
2020-11-10	Merge pull request #116 from arvados/uuid-for-resource	Peter Amstutz
2020-11-10	Use arvados uuids for RDF subjects.uuid-for-resource	Peter Amstutz
2020-11-10	Merge pull request #114 from BonfaceKilz/feature/add-twitter-feed	Pjotr Prins
2020-11-10	Demo links to permalink for countries	Pjotr Prins
2020-11-10	Delete unused endpoint	BonfaceKilz
2020-11-10	Fetch tweets from the correct redis queue	BonfaceKilz
2020-11-10	virtuoso: no-cache	Pjotr Prins
2020-11-10	virtuoso: header change	Pjotr Prins
2020-11-10	Virtuoso: run script	Pjotr Prins
2020-11-10	Document Arvados runner	Pjotr Prins
2020-11-10	virtuoso: Added a --no-cache option	Pjotr Prins
2020-11-10	Add tweet feed	BonfaceKilz
2020-11-09	Merge pull request #105 from arvados/fasta-subset-from-query	Peter Amstutz
2020-11-09	Extract PDH from result and construct URIs from thatfasta-subset-from-query	Peter Amstutz