aboutsummaryrefslogtreecommitdiff
AgeCommit message (Expand)Author
2020-07-03A little more loggingPeter Amstutz
2020-07-03Add upload.cwlPeter Amstutz
2020-07-03Add --no-start-analysisPeter Amstutz
2020-07-03Add --skip-qc for faster batch importPeter Amstutz
2020-07-03Adding --skip-qc•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-03Fix qc_fasta bug closing stream.Peter Amstutz
2020-07-03Improving genbank import workflowPeter Amstutz
2020-07-03Fix single arg upload•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-06-25Update labels.ttl•••adding label for "Illumina HiSeq X"LLTommy
2020-06-24Merge pull request #87 from AndreaGuarracino/patch-20•••added script to crete metadata for SRA data; new dictionary entries; little directory changesLLTommy
2020-06-24Merge pull request #85 from AndreaGuarracino/patch-18•••removed double sortingLLTommy
2020-06-22very little readme for the scriptsAndrea Guarracino
2020-06-22added new script to prepare metadata of sra dataAndreaGuarracino
2020-06-22moved the genbank script in his specific directoryAndreaGuarracino
2020-06-22added new dictionary entriesAndreaGuarracino
2020-06-22little fix for specimen_sourceAndrea Guarracino
2020-06-22Adjust QC filter and relabel output sequence with sample_idPeter Amstutz
2020-06-22Merge pull request #86 from AndreaGuarracino/patch-19•••corrected the wrong entitiesPeter Amstutz
2020-06-22new entries for the EBI samplesAndreaGuarracino
2020-06-22Better invalid sequence QC handlingPeter Amstutz
2020-06-22corrected the wrong entities•••http instead of https entity instead of wikiAndrea Guarracino
2020-06-22Handle upload & assembly of gzipped, paired-end fastqPeter Amstutz
2020-06-18removed double sorting•••The -s argument in odgi build do the same thing that odgi sort -p s does.Andrea Guarracino
2020-06-18Merge pull request #84 from BonfaceKilz/master•••fix: show missing markersPjotr Prins
2020-06-18fix(map): update fasta count keyBonfaceKilz
2020-06-18fix: show missing markers•••The SPARQL query returns "-85.58 44.34" instead of "Point(-85.58 44.34)", so the markers could not be displayed BonfaceKilz
2020-06-17Slighlty alter SPARQL query to truley sumarize locations for contients. Most ...lltommy
2020-06-17Merge pull request #83 from BonfaceKilz/feature/display-content-sequences•••Feature/display fasta count on a mapLLTommy
2020-06-17Add cluster marker group•••When markers are close together, lump them together. Also, it provides a convenient method of remove markers when loading other GPS co-ordinates BonfaceKilz
2020-06-17Move map logic to main.jsBonfaceKilz
2020-06-17Move js script to bottom of page•••Methods associated with map need to be created after the div container BonfaceKilz
2020-06-17Add styling to mapBonfaceKilz
2020-06-17Fix broken HTMLBonfaceKilz
2020-06-17Move leaflet CSS to the head sectionBonfaceKilz
2020-06-17Add section for map and add basic stylingBonfaceKilz
2020-06-17Add leaflet css and js libsBonfaceKilz
2020-06-17Remove literal json representation of mapBonfaceKilz
2020-06-16starting to include a maplltommy
2020-06-15Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-06-15Adding endpoints using grouping of continentslltommy
2020-06-15virtuoso: remove graph before updatePjotr Prins
2020-06-14Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-06-14Tried to make a start with the 'demo' part, table works, drilling down notlltommy
2020-06-12Merge pull request #82 from AndreaGuarracino/patch-17•••the script is more robust and verboseLLTommy
2020-06-12Adding endpoint getCountByGPS which could be used to draw a maplltommy
2020-06-12species dictionaryAndrea Guarracino
2020-06-12species are managed in another dictionary, try-catch added to avoid unexpecte...Andrea Guarracino
2020-06-12Fix buttons, close #71Pjotr Prins
2020-06-12Added github repo to DownloadPjotr Prins
2020-06-12Reinstated FASTA search (thanks @lltommy)Pjotr Prins
generated by cgit v1.2.3 (git 2.47.1) at 2025-02-16 23:16:52 +0000