index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-12-23
Merge duplicate css rule
BonfaceKilz
2020-12-19
Merge pull request #118 from BonfaceKilz/Chore/Display-10-tweets-in-feed
•••
Display only 10 tweets on the feed
Pjotr Prins
2020-12-18
Omit appending empty dicts to the list of tweets
•••
This prevents any exception thrown by jinja in the rare event when an empty tweet is stored in Redis
BonfaceKilz
2020-12-07
Display only 10 tweets on the feed
BonfaceKilz
2020-11-19
Adding another example to the SPARQL playground
lltommy
2020-11-18
Give from_sparql more keep cache.
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Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz
2020-11-18
Fix typo. Give from_sparql more RAM.
•••
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz
2020-11-18
Add query-to-gfa workflow
•••
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz
2020-11-16
Demo: add comment
Pjotr Prins
2020-11-16
Make demo results clickable
Pjotr Prins
2020-11-16
Fixed JS error on Chromium, see https://stackoverflow.com/questions/13340131/...
Pjotr Prins
2020-11-16
About page
Pjotr Prins
2020-11-16
Modify menu
Pjotr Prins
2020-11-15
removed provider_sample_id references
AndreaGuarracino
2020-11-15
fix sequencing_coverage
AndreaGuarracino
2020-11-15
fixed typos in the integer cast
AndreaGuarracino
2020-11-15
added a check on host_age
AndreaGuarracino
2020-11-14
added a check on host_age
AndreaGuarracino
2020-11-14
check empty strings
AndreaGuarracino
2020-11-14
SPARQL playground: additional examples
lltommy
2020-11-14
SPARQLplayground: Adding additional example
lltommy
2020-11-14
Adding an additional example to the SPARQL playground
lltommy
2020-11-13
fix check date sra script
AndreaGuarracino
2020-11-13
generation of dates a little more robust
AndreaGuarracino
2020-11-13
to not create YAML files with date before 2019 December
AndreaGuarracino
2020-11-13
there can be two specimen terms
AndreaGuarracino
2020-11-13
Initial commit: SPARQL playground, which replaces the demo page. Some queries...
lltommy
2020-11-13
Yaml and ShEx changes
lltommy
2020-11-13
fix in the ids to consider
AndreaGuarracino
2020-11-13
added ids-to-consider option to the NCBI script
AndreaGuarracino
2020-11-12
added closed shapes
AndreaGuarracino
2020-11-12
added missing _type: "@id" to the assembly_method field in the schema
AndreaGuarracino
2020-11-12
managed the assembly_method in the scripts, doc, and the example templates
AndreaGuarracino
2020-11-12
updated alignment_protocol field in the script, doc, and the example templates
AndreaGuarracino
2020-11-12
Trying to fix the submitter shape, shex and yaml
lltommy
2020-11-12
Proposed new technology shape/yaml structure
lltommy
2020-11-11
Support uploading new metadata only
•••
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz
2020-11-11
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-11-11
Adding GPS coordinates and contitent membership for Memphis and Canada
lltommy
2020-11-11
Make collect-seqs skip bad inputs.
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Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz
2020-11-11
Documenting and QC of YAML. Some conflicts discovered that need review
lltommy
2020-11-11
Fix resolving permalinks such as http://covid19.genenetwork.org/resource/MT32...
Pjotr Prins
2020-11-11
Notes
Pjotr Prins
2020-11-11
Conflict in guix-deploy
Pjotr Prins
2020-11-11
Deploy
PubSeq webserver
2020-11-11
Deployment
Pjotr Prins
2020-11-11
Move files to correct folder
lltommy
2020-11-11
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-11-11
Adding covid death and covid cases per country as additional background infor...
lltommy
2020-11-11
create_sra_metadata script doesn't trick the quality control about missing da...
AndreaGuarracino
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