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2020-04-29Reverting country list back, something went wrong therelltommy
2020-04-29Merge pull request #40 from AndreaGuarracino/patch-13LLTommy
updated the script to manage list field, and added new terms into the dicts
2020-04-28updated to manage list fields and added new control on nasopharyngeal/throat ↵Andrea Guarracino
swab
2020-04-28Updated with new termsAndrea Guarracino
2020-04-28Updated with new termsAndrea Guarracino
2020-04-28Updated - 1731 IDs - 2020/04/28Andrea Guarracino
2020-04-28Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-04-28Decision to settle for float instead of integers for the coveragelltommy
2020-04-28Update spodgi docker imagePeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-28Call clustalw to compare sequence to referencePeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-28Whatever happend to the minimal metadata, I restored itlltommy
2020-04-28Adding field 'publication' to the maximum examplelltommy
2020-04-28Changes to the structure - we use lists now instead of strings where it ↵lltommy
makes sense. This allows us to have multiple values where in makes sense
2020-04-26Add enrichment vocabularies to gitlltommy
2020-04-26Pushing some new functions, rename some old oneslltommy
2020-04-26Adding a function, correcting some variable nameslltommy
2020-04-26Updating dicslltommy
2020-04-26Merge pull request #39 from ↵LLTommy
BonfaceKilz/feature/display-results-of-api-consumption Feature/display results of api consumption
2020-04-26Merge from remote branch into feature/display-results-of-api-consumptionBonfaceKilz
2020-04-26Update styles to match suggested mockupBonfaceKilz
Ref: https://xd.adobe.com/view/fa2b4841-e463-432e-7465-e96b4ed200ff-8c1a/screen/b84fcf66-9580-4ae2-b37d-7ee15401d627/Pangenome-Browser-Manual-Metadata-Host
2020-04-26Display the output of the queries as prettified JSON for nowBonfaceKilz
2020-04-26Jsonify response and pick the valuesBonfaceKilz
2020-04-26Add basic structure for interacting with the APIBonfaceKilz
2020-04-26Remove unnecessary JSBonfaceKilz
2020-04-26Put JS code in its own JS fileBonfaceKilz
2020-04-26Reposition sponsor logo at the bottomBonfaceKilz
2020-04-26Put CSS code into it's own separate CSS fileBonfaceKilz
2020-04-26Wrap extra flags to cater for non-bash terminalsBonfaceKilz
`pip install -e .[web]` does not work on zsh. Wrapping `.web` in quotes makes the command in all terminals
2020-04-26Make package data accessible from `setup.py`BonfaceKilz
Based off: https://stackoverflow.com/a/39024947/3668255
2020-04-26Update .gitignore fileBonfaceKilz
2020-04-26Update styles to match suggested mockupBonfaceKilz
Ref: https://xd.adobe.com/view/fa2b4841-e463-432e-7465-e96b4ed200ff-8c1a/screen/b84fcf66-9580-4ae2-b37d-7ee15401d627/Pangenome-Browser-Manual-Metadata-Host
2020-04-26Display the output of the queries as prettified JSON for nowBonfaceKilz
2020-04-26Jsonify response and pick the valuesBonfaceKilz
2020-04-26Add basic structure for interacting with the APIBonfaceKilz
2020-04-25Remove unnecessary JSBonfaceKilz
2020-04-25Put JS code in its own JS fileBonfaceKilz
2020-04-25Reposition sponsor logo at the bottomBonfaceKilz
2020-04-25Put CSS code into it's own separate CSS fileBonfaceKilz
2020-04-25Wrap extra flags to cater for non-bash terminalsBonfaceKilz
`pip install -e .[web]` does not work on zsh. Wrapping `.web` in quotes makes the command in all terminals
2020-04-24Add script that updates Virtuoso - run as a CRON jobPjotr Prins
2020-04-24Expand on Guix container invocationPjotr Prins
2020-04-24Make package data accessible from `setup.py`BonfaceKilz
Based off: https://stackoverflow.com/a/39024947/3668255
2020-04-24Update .gitignore fileBonfaceKilz
2020-04-23Merge pull request #34 from AndreaGuarracino/patch-12LLTommy
new ID, new script release, new dict term
2020-04-23Adding API endpoints to drive the homepage. Dirty but functionallltommy
2020-04-23Merge pull request #1 from AndreaGuarracino/patch-11Andrea Guarracino
Patch 11
2020-04-23code cleaning, refactoring, submitter name and addressAndrea Guarracino
- additional_submitter_information for information not equal to name or address - added another check for coverage
2020-04-23added nasal swab for several new IDsAndrea Guarracino
2020-04-23updated IDs list - 2020/04/23 - 1436 IDsAndrea Guarracino
2020-04-23adding a submitter comment fieldlltommy
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