index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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2020-04-23
Adding a third sequence technology option
lltommy
2020-04-23
Merge pull request #30 from adamnovak/patch-3
LLTommy
2020-04-23
Merge branch 'master' into patch-3
LLTommy
2020-04-23
Merge pull request #33 from AndreaGuarracino/patch-9
LLTommy
2020-04-23
Merge pull request #32 from AndreaGuarracino/patch-10
LLTommy
2020-04-22
code cleaning, checking and writing missing term on file
Andrea Guarracino
2020-04-22
created dict for host health status
Andrea Guarracino
2020-04-22
added some rows in the speciesman dict
Andrea Guarracino
2020-04-22
added some rows in the ncbi_countries dict
Andrea Guarracino
2020-04-22
updated IDs list - 2020/04/22
Andrea Guarracino
2020-04-22
Fixing ShEx expression, one ? too much
lltommy
2020-04-22
Forgot to add _id
lltommy
2020-04-22
updating example with ontology term for host_health_status
lltommy
2020-04-22
Including restrictions to the host status
lltommy
2020-04-22
Small changes all around, trying to make the importer/metadata better
lltommy
2020-04-22
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-04-22
Merge pull request #31 from DCGenomics/patch-1
LLTommy
2020-04-22
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-04-21
Update metadata.yaml
Ben Busby
2020-04-21
Increase ram requirement for minimap2
Peter Amstutz
2020-04-21
Workaround CWL limit by chunking file list
Peter Amstutz
2020-04-21
Work around CWL content size limit by chunking
Peter Amstutz
2020-04-21
add noLinkCheck to specimen_source2
Peter Amstutz
2020-04-21
Tweak handling of "coverage" also fix typo
Peter Amstutz
2020-04-21
Working on NCBI import
Peter Amstutz
2020-04-21
fixing silly mistake
lltommy
2020-04-21
Updated shex and manditory fields and stuff
lltommy
2020-04-20
Add readsMergeDedup.fasta to output
Peter Amstutz
2020-04-20
Make sure there is a newline in relabeled fasta (but no blank lines)
Peter Amstutz
2020-04-20
Reconsidered these should be noLinkCheck
Peter Amstutz
2020-04-20
Add identity:true to collection_location
Peter Amstutz
2020-04-20
Schema changes from @LLTommy
Peter Amstutz
2020-04-20
Better handling of duplicate sequences
Peter Amstutz
2020-04-20
Use a date picker for any string 'date'
Adam Novak
2020-04-20
Support any number of series fields
Adam Novak
2020-04-20
Nicer headings for xxx2 fields and float support
Adam Novak
2020-04-20
Make doc not contradict option list
Adam Novak
2020-04-20
Put back Intersex with the closest PATO equivalent
Adam Novak
2020-04-20
Relabel sequences to match metadata subjects.
Peter Amstutz
2020-04-20
Move workflows into main repo
Peter Amstutz
2020-04-20
Add ShEx validation
Peter Amstutz
2020-04-20
Merge pull request #29 from inutano/fix-mappings
LLTommy
2020-04-20
Merge pull request #28 from AndreaGuarracino/patch-8
LLTommy
2020-04-20
fix MinION to ONT
Tazro Inutano Ohta
2020-04-20
Making collection date and collection location MANDATORY fields, turning orci...
lltommy
2020-04-20
Fixing string -> URI in speciman, plus other things
lltommy
2020-04-19
added 'np/op' control for specimen_source
Andrea Guarracino
2020-04-19
Further updates to our NCBI dictonaries to translate this s*** to our model
lltommy
2020-04-19
fixed missing variable and managed comma in dicts
Andrea Guarracino
2020-04-19
small updates to the yaml schema, updating the example files
lltommy
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