Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-04-26 | Update styles to match suggested mockup | BonfaceKilz | |
Ref: https://xd.adobe.com/view/fa2b4841-e463-432e-7465-e96b4ed200ff-8c1a/screen/b84fcf66-9580-4ae2-b37d-7ee15401d627/Pangenome-Browser-Manual-Metadata-Host | |||
2020-04-26 | Display the output of the queries as prettified JSON for now | BonfaceKilz | |
2020-04-26 | Jsonify response and pick the values | BonfaceKilz | |
2020-04-26 | Add basic structure for interacting with the API | BonfaceKilz | |
2020-04-26 | Remove unnecessary JS | BonfaceKilz | |
2020-04-26 | Put JS code in its own JS file | BonfaceKilz | |
2020-04-26 | Reposition sponsor logo at the bottom | BonfaceKilz | |
2020-04-26 | Put CSS code into it's own separate CSS file | BonfaceKilz | |
2020-04-26 | Wrap extra flags to cater for non-bash terminals | BonfaceKilz | |
`pip install -e .[web]` does not work on zsh. Wrapping `.web` in quotes makes the command in all terminals | |||
2020-04-26 | Make package data accessible from `setup.py` | BonfaceKilz | |
Based off: https://stackoverflow.com/a/39024947/3668255 | |||
2020-04-26 | Update .gitignore file | BonfaceKilz | |
2020-04-24 | Add script that updates Virtuoso - run as a CRON job | Pjotr Prins | |
2020-04-24 | Expand on Guix container invocation | Pjotr Prins | |
2020-04-23 | Merge pull request #34 from AndreaGuarracino/patch-12 | LLTommy | |
new ID, new script release, new dict term | |||
2020-04-23 | Adding API endpoints to drive the homepage. Dirty but functional | lltommy | |
2020-04-23 | Merge pull request #1 from AndreaGuarracino/patch-11 | Andrea Guarracino | |
Patch 11 | |||
2020-04-23 | code cleaning, refactoring, submitter name and address | Andrea Guarracino | |
- additional_submitter_information for information not equal to name or address - added another check for coverage | |||
2020-04-23 | added nasal swab for several new IDs | Andrea Guarracino | |
2020-04-23 | updated IDs list - 2020/04/23 - 1436 IDs | Andrea Guarracino | |
2020-04-23 | adding a submitter comment field | lltommy | |
2020-04-23 | Adding a third sequence technology option | lltommy | |
2020-04-23 | Merge pull request #30 from adamnovak/patch-3 | LLTommy | |
Additional improvements to web UI | |||
2020-04-23 | Merge branch 'master' into patch-3 | LLTommy | |
2020-04-23 | Merge pull request #33 from AndreaGuarracino/patch-9 | LLTommy | |
script updating | |||
2020-04-23 | Merge pull request #32 from AndreaGuarracino/patch-10 | LLTommy | |
dictionaries updating and creation | |||
2020-04-22 | code cleaning, checking and writing missing term on file | Andrea Guarracino | |
- the script checks for country and specimen_source - now the missing terms are written on a tsv file | |||
2020-04-22 | created dict for host health status | Andrea Guarracino | |
2020-04-22 | added some rows in the speciesman dict | Andrea Guarracino | |
2020-04-22 | added some rows in the ncbi_countries dict | Andrea Guarracino | |
2020-04-22 | updated IDs list - 2020/04/22 | Andrea Guarracino | |
2020-04-22 | Fixing ShEx expression, one ? too much | lltommy | |
2020-04-22 | Forgot to add _id | lltommy | |
2020-04-22 | updating example with ontology term for host_health_status | lltommy | |
2020-04-22 | Including restrictions to the host status | lltommy | |
2020-04-22 | Small changes all around, trying to make the importer/metadata better | lltommy | |
2020-04-22 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
2020-04-22 | Merge pull request #31 from DCGenomics/patch-1 | LLTommy | |
Update metadata.yaml | |||
2020-04-22 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
2020-04-21 | Update metadata.yaml | Ben Busby | |
2020-04-21 | Increase ram requirement for minimap2 | Peter Amstutz | |
Add --kickoff to immediately start an analysis workflow. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | Workaround CWL limit by chunking file list | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | Work around CWL content size limit by chunking | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | add noLinkCheck to specimen_source2 | Peter Amstutz | |
2020-04-21 | Tweak handling of "coverage" also fix typo | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | Working on NCBI import | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | fixing silly mistake | lltommy | |
2020-04-21 | Updated shex and manditory fields and stuff | lltommy | |
2020-04-20 | Add readsMergeDedup.fasta to output | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-20 | Make sure there is a newline in relabeled fasta (but no blank lines) | Peter Amstutz | |
2020-04-20 | Reconsidered these should be noLinkCheck | Peter Amstutz | |