index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-04-26
Display the output of the queries as prettified JSON for now
BonfaceKilz
2020-04-26
Jsonify response and pick the values
BonfaceKilz
2020-04-26
Add basic structure for interacting with the API
BonfaceKilz
2020-04-26
Remove unnecessary JS
BonfaceKilz
2020-04-26
Put JS code in its own JS file
BonfaceKilz
2020-04-26
Reposition sponsor logo at the bottom
BonfaceKilz
2020-04-26
Put CSS code into it's own separate CSS file
BonfaceKilz
2020-04-26
Wrap extra flags to cater for non-bash terminals
•••
`pip install -e .[web]` does not work on zsh. Wrapping `.web` in quotes makes the command in all terminals
BonfaceKilz
2020-04-26
Make package data accessible from `setup.py`
•••
Based off: https://stackoverflow.com/a/39024947/3668255
BonfaceKilz
2020-04-26
Update .gitignore file
BonfaceKilz
2020-04-26
Update styles to match suggested mockup
•••
Ref: https://xd.adobe.com/view/fa2b4841-e463-432e-7465-e96b4ed200ff-8c1a/screen/b84fcf66-9580-4ae2-b37d-7ee15401d627/Pangenome-Browser-Manual-Metadata-Host
BonfaceKilz
2020-04-26
Display the output of the queries as prettified JSON for now
BonfaceKilz
2020-04-26
Jsonify response and pick the values
BonfaceKilz
2020-04-26
Add basic structure for interacting with the API
BonfaceKilz
2020-04-25
Remove unnecessary JS
BonfaceKilz
2020-04-25
Put JS code in its own JS file
BonfaceKilz
2020-04-25
Reposition sponsor logo at the bottom
BonfaceKilz
2020-04-25
Put CSS code into it's own separate CSS file
BonfaceKilz
2020-04-25
Wrap extra flags to cater for non-bash terminals
•••
`pip install -e .[web]` does not work on zsh. Wrapping `.web` in quotes makes the command in all terminals
BonfaceKilz
2020-04-25
BLOG
Pjotr Prins
2020-04-25
Paper typo
Pjotr Prins
2020-04-25
Add reference to paper
Pjotr Prins
2020-04-25
Change project name
Pjotr Prins
2020-04-24
Add script that updates Virtuoso - run as a CRON job
Pjotr Prins
2020-04-24
Expand on Guix container invocation
Pjotr Prins
2020-04-24
Make package data accessible from `setup.py`
•••
Based off: https://stackoverflow.com/a/39024947/3668255
BonfaceKilz
2020-04-24
Update .gitignore file
BonfaceKilz
2020-04-23
Merge pull request #34 from AndreaGuarracino/patch-12
•••
new ID, new script release, new dict term
LLTommy
2020-04-23
Adding API endpoints to drive the homepage. Dirty but functional
lltommy
2020-04-23
Merge pull request #1 from AndreaGuarracino/patch-11
•••
Patch 11
Andrea Guarracino
2020-04-23
code cleaning, refactoring, submitter name and address
•••
- additional_submitter_information for information not equal to name or address - added another check for coverage
Andrea Guarracino
2020-04-23
added nasal swab for several new IDs
Andrea Guarracino
2020-04-23
updated IDs list - 2020/04/23 - 1436 IDs
Andrea Guarracino
2020-04-23
adding a submitter comment field
lltommy
2020-04-23
Adding a third sequence technology option
lltommy
2020-04-23
Merge pull request #30 from adamnovak/patch-3
•••
Additional improvements to web UI
LLTommy
2020-04-23
Merge branch 'master' into patch-3
LLTommy
2020-04-23
Merge pull request #33 from AndreaGuarracino/patch-9
•••
script updating
LLTommy
2020-04-23
Merge pull request #32 from AndreaGuarracino/patch-10
•••
dictionaries updating and creation
LLTommy
2020-04-22
code cleaning, checking and writing missing term on file
•••
- the script checks for country and specimen_source - now the missing terms are written on a tsv file
Andrea Guarracino
2020-04-22
created dict for host health status
Andrea Guarracino
2020-04-22
added some rows in the speciesman dict
Andrea Guarracino
2020-04-22
added some rows in the ncbi_countries dict
Andrea Guarracino
2020-04-22
updated IDs list - 2020/04/22
Andrea Guarracino
2020-04-22
Fixing ShEx expression, one ? too much
lltommy
2020-04-22
Forgot to add _id
lltommy
2020-04-22
updating example with ontology term for host_health_status
lltommy
2020-04-22
Including restrictions to the host status
lltommy
2020-04-22
Small changes all around, trying to make the importer/metadata better
lltommy
2020-04-22
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
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