index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-07-06
new terms in the ncbi_countries dictionary
Andrea Guarracino
2020-07-06
added seq technology in its additional information field if the term is missi...
AndreaGuarracino
2020-07-06
updated SraExperimentPackage info
AndreaGuarracino
2020-07-06
two more terms in the ncbi_sequencing_technology dictionary
Andrea Guarracino
2020-07-06
fixed bugs in the download_sra_data
Andrea Guarracino
2020-07-06
new terms in the sequencing_technology dictionary
Andrea Guarracino
2020-07-05
Add bh20-seq-analyzer --print-status
Peter Amstutz
2020-07-03
A little more logging
Peter Amstutz
2020-07-03
Add upload.cwl
Peter Amstutz
2020-07-03
Add --no-start-analysis
Peter Amstutz
2020-07-03
Add --skip-qc for faster batch import
Peter Amstutz
2020-07-03
Adding --skip-qc
Peter Amstutz
2020-07-03
Fix qc_fasta bug closing stream.
Peter Amstutz
2020-07-03
Improving genbank import workflow
Peter Amstutz
2020-07-03
Fix single arg upload
Peter Amstutz
2020-06-25
Update labels.ttl
LLTommy
2020-06-24
Merge pull request #87 from AndreaGuarracino/patch-20
LLTommy
2020-06-24
Merge pull request #85 from AndreaGuarracino/patch-18
LLTommy
2020-06-22
very little readme for the scripts
Andrea Guarracino
2020-06-22
added new script to prepare metadata of sra data
AndreaGuarracino
2020-06-22
moved the genbank script in his specific directory
AndreaGuarracino
2020-06-22
added new dictionary entries
AndreaGuarracino
2020-06-22
little fix for specimen_source
Andrea Guarracino
2020-06-22
Adjust QC filter and relabel output sequence with sample_id
Peter Amstutz
2020-06-22
Merge pull request #86 from AndreaGuarracino/patch-19
Peter Amstutz
2020-06-22
new entries for the EBI samples
AndreaGuarracino
2020-06-22
Better invalid sequence QC handling
Peter Amstutz
2020-06-22
corrected the wrong entities
Andrea Guarracino
2020-06-22
Handle upload & assembly of gzipped, paired-end fastq
Peter Amstutz
2020-06-18
removed double sorting
Andrea Guarracino
2020-06-18
Merge pull request #84 from BonfaceKilz/master
Pjotr Prins
2020-06-18
fix(map): update fasta count key
BonfaceKilz
2020-06-18
fix: show missing markers
BonfaceKilz
2020-06-17
Slighlty alter SPARQL query to truley sumarize locations for contients. Most ...
lltommy
2020-06-17
Merge pull request #83 from BonfaceKilz/feature/display-content-sequences
LLTommy
2020-06-17
Add cluster marker group
BonfaceKilz
2020-06-17
Move map logic to main.js
BonfaceKilz
2020-06-17
Move js script to bottom of page
BonfaceKilz
2020-06-17
Add styling to map
BonfaceKilz
2020-06-17
Fix broken HTML
BonfaceKilz
2020-06-17
Move leaflet CSS to the head section
BonfaceKilz
2020-06-17
Add section for map and add basic styling
BonfaceKilz
2020-06-17
Add leaflet css and js libs
BonfaceKilz
2020-06-17
Remove literal json representation of map
BonfaceKilz
2020-06-16
starting to include a map
lltommy
2020-06-15
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-06-15
Adding endpoints using grouping of continents
lltommy
2020-06-15
virtuoso: remove graph before update
Pjotr Prins
2020-06-14
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-06-14
Tried to make a start with the 'demo' part, table works, drilling down not
lltommy
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