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-rw-r--r--workflows/pangenome-generate/from_sparql.cwl7
1 files changed, 6 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/from_sparql.cwl b/workflows/pangenome-generate/from_sparql.cwl
index ab85656..380b59c 100644
--- a/workflows/pangenome-generate/from_sparql.cwl
+++ b/workflows/pangenome-generate/from_sparql.cwl
@@ -1,5 +1,7 @@
cwlVersion: v1.1
class: CommandLineTool
+$namespaces:
+ arv: "http://arvados.org/cwl#"
requirements:
DockerRequirement:
dockerFile: |
@@ -7,7 +9,10 @@ requirements:
RUN apt-get update && apt-get -yq --no-install-recommends install samtools python3-rdflib
dockerImageId: rdflib-and-samtools
ResourceRequirement:
- ramMin: 1024
+ ramMin: 768
+ arv:RuntimeConstraints:
+ keep_cache: 2048
+ outputDirType: keep_output_dir
inputs:
script:
type: File