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-rw-r--r--workflows/pangenome-generate/minimap2.cwl2
-rw-r--r--workflows/pangenome-generate/odgi_to_rdf.cwl4
2 files changed, 4 insertions, 2 deletions
diff --git a/workflows/pangenome-generate/minimap2.cwl b/workflows/pangenome-generate/minimap2.cwl
index 42d1dce..bf8eb4c 100644
--- a/workflows/pangenome-generate/minimap2.cwl
+++ b/workflows/pangenome-generate/minimap2.cwl
@@ -12,7 +12,7 @@ hints:
ResourceRequirement:
coresMin: 8
coresMax: 32
- ramMin: $(9 * 1024)
+ ramMin: $(15 * 1024)
outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20))
stdout: $(inputs.readsFA.nameroot).paf
baseCommand: minimap2
diff --git a/workflows/pangenome-generate/odgi_to_rdf.cwl b/workflows/pangenome-generate/odgi_to_rdf.cwl
index 079d6fb..e6a279b 100644
--- a/workflows/pangenome-generate/odgi_to_rdf.cwl
+++ b/workflows/pangenome-generate/odgi_to_rdf.cwl
@@ -3,10 +3,12 @@ class: CommandLineTool
cwlVersion: v1.1
hints:
DockerRequirement:
- dockerPull: spodgi/spodgi
+ dockerPull: jerven/spodgi:0.0.6
requirements:
InlineJavascriptRequirement: {}
ShellCommandRequirement: {}
+ ResourceRequirement:
+ ramMin: $((2 * 1024) + 1)
inputs:
- id: odgi
type: File