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-rw-r--r--workflows/pangenome-generate/odgi-build.cwl2
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/odgi-build.cwl b/workflows/pangenome-generate/odgi-build.cwl
index 0bd6a20..b594438 100644
--- a/workflows/pangenome-generate/odgi-build.cwl
+++ b/workflows/pangenome-generate/odgi-build.cwl
@@ -21,6 +21,6 @@ hints:
listing:
- entry: $(inputs.inputGFA)
writable: true
-arguments: [odgi, build, -g, $(inputs.inputGFA), -s, -o, -,
+arguments: [odgi, build, -g, $(inputs.inputGFA), -o, -,
{shellQuote: false, valueFrom: "|"},
odgi, sort, -i, -, -p, s, -o, $(inputs.inputGFA.nameroot).odgi]