diff options
Diffstat (limited to 'workflows/pull-data/genbank/README.md')
| -rw-r--r-- | workflows/pull-data/genbank/README.md | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pull-data/genbank/README.md b/workflows/pull-data/genbank/README.md index d7c294b..479ddc9 100644 --- a/workflows/pull-data/genbank/README.md +++ b/workflows/pull-data/genbank/README.md @@ -6,7 +6,7 @@ sparql-fetch-ids > pubseq_ids.txt # --- get list of missing genbank IDs genbank-fetch-ids.py --skip pubseq_ids.txt > genbank_ids.txt # --- fetch XML -update-from-genbank.py --ids genbank_ids.txt --outdir ~/tmp/genbank +update-from-genbank.py --ids genbank_ids.txt --out ~/tmp/genbank # --- Transform to YAML and FASTA transform-genbank-xml2yamlfa --dir ~/tmp/genbank id --outdir ~/tmp/pubseq ``` |