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-rw-r--r--workflows/phylogeny/metadata.cwl33
1 files changed, 33 insertions, 0 deletions
diff --git a/workflows/phylogeny/metadata.cwl b/workflows/phylogeny/metadata.cwl
new file mode 100644
index 0000000..4ce6e17
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+++ b/workflows/phylogeny/metadata.cwl
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+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.1
+
+class: CommandLineTool
+baseCommand: python
+
+inputs:
+    main_py_script:
+        type: File
+        inputBinding:
+            position: 1
+
+    metadata:
+        type: string
+        inputBinding:
+            position: 2
+
+    coverage_matrix:
+        type: File
+        inputBinding:
+            position: 3
+
+    coverage_matrix_with_metadata:
+        type: string
+        inputBinding:
+            position: 4
+
+outputs:
+    coverage_matrix_with_metadata_out:
+        type: File
+        outputBinding:
+            glob: '*.metadata.tsv'
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