1 files changed, 23 insertions, 0 deletions
diff --git a/workflows/phylogeny/awk-coverage.cwl b/workflows/phylogeny/awk-coverage.cwl
new file mode 100644
index 0000000..f7a357f
--- /dev/null
+++ b/workflows/phylogeny/awk-coverage.cwl
@@ -0,0 +1,23 @@
+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.1
+class: CommandLineTool
+
+baseCommand: awk
+
+inputs:
+  consensus_regex:
+    type: string
+    inputBinding:
+        position: 1
+
+  coverage_tsv:
+    type: File
+    inputBinding:
+        position: 2
+ 
+outputs:
+  awk_coverage_matrix:
+    type: stdout
+
+stdout: coverage.no_consensus.tsv
+\ No newline at end of file