diff options
Diffstat (limited to 'workflows/pangenome-generate/spoa.cwl')
| -rw-r--r-- | workflows/pangenome-generate/spoa.cwl | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/workflows/pangenome-generate/spoa.cwl b/workflows/pangenome-generate/spoa.cwl index 1e390d8..132633c 100644 --- a/workflows/pangenome-generate/spoa.cwl +++ b/workflows/pangenome-generate/spoa.cwl @@ -2,8 +2,7 @@ cwlVersion: v1.1 class: CommandLineTool inputs: readsFA: File -stdout: $(inputs.readsFA.nameroot).g6.gfa -script: + script: type: File default: {class: File, location: relabel-seqs.py} outputs: @@ -20,6 +19,7 @@ hints: ramMin: $(15 * 1024) outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20)) baseCommand: spoa +stdout: $(inputs.readsFA.nameroot).g6.gfa arguments: [ $(inputs.readsFA), -G, |