1 files changed, 8 insertions, 2 deletions
diff --git a/workflows/pangenome-generate/relabel-seqs.cwl b/workflows/pangenome-generate/relabel-seqs.cwl
index b5b7231..2b780d4 100644
--- a/workflows/pangenome-generate/relabel-seqs.cwl
+++ b/workflows/pangenome-generate/relabel-seqs.cwl
@@ -5,7 +5,13 @@ inputs:
   subjects: string[]
 outputs:
   relabeledSeqs:
-    type: stdout
+    type: File
+    outputBinding:
+      glob: relabeledSeqs.fasta
+  originalLabels:
+    type: File
+    outputBinding:
+      glob: originalLabels.ttl
 requirements:
   InlineJavascriptRequirement: {}
   InitialWorkDirRequirement:
@@ -15,5 +21,5 @@ requirements:
 hints:
   DockerRequirement:
     dockerPull: commonworkflowlanguage/cwltool_module
-stdout: relabeledSeqs.fasta
+stdout:
 baseCommand: [python, relabel-seqs.py]