diff options
Diffstat (limited to 'workflows/pangenome-generate/pangenome-generate_spoa.cwl')
| -rw-r--r-- | workflows/pangenome-generate/pangenome-generate_spoa.cwl | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/workflows/pangenome-generate/pangenome-generate_spoa.cwl b/workflows/pangenome-generate/pangenome-generate_spoa.cwl index ed12254..fdf3d9f 100644 --- a/workflows/pangenome-generate/pangenome-generate_spoa.cwl +++ b/workflows/pangenome-generate/pangenome-generate_spoa.cwl @@ -30,7 +30,7 @@ outputs: outputSource: odgi2rdf/rdf readsMergeDedupSortedByQualAndLen: type: File - outputSource: dedup_and_sort_by_quality_and_len/reads_dedupped_sorted_by_quality_and_len + outputSource: dedup_and_sort_by_quality_and_len/sortedReadsFA mergedMetadata: type: File outputSource: dups2metadata/merged @@ -42,12 +42,12 @@ outputs: # outputSource: segment_components/colinear_components steps: dedup_and_sort_by_quality_and_len: - in: {reads: seqs} + in: {readsFA: seqs} out: [sortedReadsFA, dups] run: sort_fasta_by_quality_and_len.cwl induceGraph: in: - readsFA: dedup_and_sort_by_quality_and_len/reads_dedupped_sorted_by_quality_and_len + readsFA: dedup_and_sort_by_quality_and_len/sortedReadsFA out: [spoaGFA] run: spoa.cwl buildGraph: |