aboutsummaryrefslogtreecommitdiff
path: root/workflows/pangenome-generate/odgi-viz.cwl
diff options
context:
space:
mode:
Diffstat (limited to 'workflows/pangenome-generate/odgi-viz.cwl')
-rw-r--r--workflows/pangenome-generate/odgi-viz.cwl25
1 files changed, 0 insertions, 25 deletions
diff --git a/workflows/pangenome-generate/odgi-viz.cwl b/workflows/pangenome-generate/odgi-viz.cwl
deleted file mode 100644
index d440fcb..0000000
--- a/workflows/pangenome-generate/odgi-viz.cwl
+++ /dev/null
@@ -1,25 +0,0 @@
-cwlVersion: v1.1
-class: CommandLineTool
-inputs:
- inputODGI: File
-outputs:
- odgiPNG:
- type: File
- outputBinding:
- glob: $(inputs.inputODGI.nameroot).png
-requirements:
- InlineJavascriptRequirement: {}
-hints:
- DockerRequirement:
- dockerPull: "quay.io/biocontainers/odgi:v0.3--py37h8b12597_0"
- ResourceRequirement:
- coresMin: 4
- ramMin: $(7 * 1024)
- outdirMin: 1
-baseCommand: [odgi, viz]
-arguments: [-i, $(inputs.inputODGI),
- -o, $(inputs.inputODGI.nameroot).png,
- -x, "50000",
- -y, "500",
- -R,
- -P, "4"]