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-rw-r--r--workflows/pangenome-generate/arv-main.cwl4
1 files changed, 2 insertions, 2 deletions
diff --git a/workflows/pangenome-generate/arv-main.cwl b/workflows/pangenome-generate/arv-main.cwl
index 8d7f83b..dae47e6 100644
--- a/workflows/pangenome-generate/arv-main.cwl
+++ b/workflows/pangenome-generate/arv-main.cwl
@@ -21,7 +21,7 @@ outputs:
outputSource: pangenome-generate/odgiRDF
readsMergeDedup:
type: File
- outputSource: pangenome-generate/readsMergeDedup
+ outputSource: pangenome-generate/readsMergeDedupSortedByQualAndLen
mergedMetadata:
type: File
outputSource: pangenome-generate/mergedMetadata
@@ -45,4 +45,4 @@ steps:
seqs: collect-seqs/relabeledSeqs
metadata: collect-seqs/mergedMetadata
exclude: exclude
- out: [odgiGraph, spoaGFA, odgiRDF, readsMergeDedup, mergedMetadata]
+ out: [odgiGraph, spoaGFA, odgiRDF, readsMergeDedupSortedByQualAndLen, mergedMetadata]