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Diffstat (limited to 'workflows/fastq2fasta/bcftools-view-qc.cwl')
| -rw-r--r-- | workflows/fastq2fasta/bcftools-view-qc.cwl | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/fastq2fasta/bcftools-view-qc.cwl b/workflows/fastq2fasta/bcftools-view-qc.cwl index 477c596..336f455 100644 --- a/workflows/fastq2fasta/bcftools-view-qc.cwl +++ b/workflows/fastq2fasta/bcftools-view-qc.cwl @@ -8,7 +8,7 @@ baseCommand: bcftools arguments: - view - -i - - 'QUAL>1 && (GT="AA" || GT="Aa")' + - 'QUAL > 1 && GT="a"' - -Oz - --threads=$(inputs.threads) - $(inputs.bcf) |