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Diffstat (limited to 'workflows/fastq2fasta/bcftools-consensus.cwl')
-rw-r--r-- | workflows/fastq2fasta/bcftools-consensus.cwl | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/fastq2fasta/bcftools-consensus.cwl b/workflows/fastq2fasta/bcftools-consensus.cwl index dffdbe3..4704e79 100644 --- a/workflows/fastq2fasta/bcftools-consensus.cwl +++ b/workflows/fastq2fasta/bcftools-consensus.cwl @@ -9,7 +9,7 @@ baseCommand: bcftools arguments: - consensus - -i - - 'QUAL > 1 && GT="a"' + - 'QUAL > 10 && GT="a"' - -Hla - -f - $(inputs.ref_fasta) |