diff options
Diffstat (limited to 'workflows/fastq2fasta/bcftools-concat.cwl')
| -rw-r--r-- | workflows/fastq2fasta/bcftools-concat.cwl | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/workflows/fastq2fasta/bcftools-concat.cwl b/workflows/fastq2fasta/bcftools-concat.cwl new file mode 100644 index 0000000..fc33a30 --- /dev/null +++ b/workflows/fastq2fasta/bcftools-concat.cwl @@ -0,0 +1,24 @@ +#!/usr/bin/env cwl-runner +class: CommandLineTool +cwlVersion: v1.1 +hints: + DockerRequirement: + dockerPull: "quay.io/biocontainers/bcftools:1.10.2--hd2cd319_0" +baseCommand: bcftools +arguments: + - concat + - -Ou + - -o + - $(inputs.output_name) + - $(inputs.bcf_files) +inputs: + - id: output_name + type: string + default: "merged.bcf" + - id: bcf_files + type: File[] +outputs: + - id: merged_bcf + type: File + outputBinding: + glob: "$(inputs.output_name)" |