diff options
Diffstat (limited to 'templates')
| -rw-r--r-- | templates/error.html | 19 | ||||
| -rw-r--r-- | templates/form.html | 95 | ||||
| -rw-r--r-- | templates/success.html | 24 |
3 files changed, 0 insertions, 138 deletions
diff --git a/templates/error.html b/templates/error.html deleted file mode 100644 index c2ab0a4..0000000 --- a/templates/error.html +++ /dev/null @@ -1,19 +0,0 @@ -<!DOCTYPE html> -<html> - <head> - <meta charset="UTF-8"> - <meta name="viewport" content="width=device-width, initial-scale=1"> - <title>Upload Failed</title> - </head> - <body> - <h1>Upload Failed</h1> - <hr> - <p> - Your upload has failed. {{error_message}} - </p> - <p> - <a href="/">Click here to try again.</a> - </p> - <hr> - </body> -</html> diff --git a/templates/form.html b/templates/form.html deleted file mode 100644 index 4ad41e2..0000000 --- a/templates/form.html +++ /dev/null @@ -1,95 +0,0 @@ -<!DOCTYPE html> -<html> - <head> - <meta charset="UTF-8"> - <meta name="viewport" content="width=device-width, initial-scale=1"> - <title>Simple Web Uploader for Public SARS-CoV-2 Sequence Resource</title> - </head> - <body> - <h1>Simple Web Uploader for Public SARS-CoV-2 Sequence Resource</h1> - <hr> - <p> - This tool can be used to upload sequenced genomes of SARS-CoV-2 samples to the <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">Public SARS-CoV-2 Sequence Resource</a>. Your uploaded sequence will automatically be processed and incorporated into the public pangenome. - </p> - <hr> - <form action="/submit" method="POST" enctype="multipart/form-data" id="main_form"> - <label for="fasta">Select FASTA file for assembled genome (max 1MB):</label> - <br> - <input type="file" id="fasta" name="fasta" accept=".fa,.fasta,.fna" required> - <br> - - <label>Select metadata submission method:</label> - <br> - <input type="radio" id="metadata_upload" name="metadata_type" value="upload" onchange="setMode()" checked required> - <label for="metadata_upload">Upload metadata file</label> - <br> - <input type="radio" id="metadata_form" name="metadata_type" value="fill" onchange="setMode()" required> - <label for="metadata_form">Fill in metadata manually</label> - <br> - - <div id="metadata_upload_form_spot"> - <div id="metadata_upload_form"> - <label for="metadata">Select JSON or YAML metadata file following <a href="https://github.com/arvados/bh20-seq-resource/blob/master/bh20sequploader/bh20seq-schema.yml" target="_blank">this schema</a> (<a href="https://github.com/arvados/bh20-seq-resource/blob/master/example/metadata.yaml" target="_blank">Example 1</a>, <a href="https://github.com/arvados/bh20-seq-resource/blob/master/example/minimal_example.yaml" target="_blank">Example 2</a>, max 1MB):</label> - <br> - <input type="file" id="metadata" name="metadata" accept=".json,.yml,.yaml" required> - <br> - </div> - </div> - - <div id="metadata_fill_form_spot"> - <div id="metadata_fill_form"> - {% for record in fields %} - {% if 'heading' in record %} - <h4>{{ record['heading'] }}</h4> - {% else %} - <label for="{{ record['id'] }}"> - {{ record['label'] }} - {{ "*" if record['required'] else "" }} - {% if 'ref_url' in record %} - <a href="{{ record['ref_url'] }}" title="More Info" target="_blank">?</a> - {% endif %} - </label> - <br> - <input type="{{ record['type'] }}" id="{{ record['id'] }}" name="{{ record['id'] }}" {{ "required" if record['required'] else "" }}> - <br> - {% endif %} - {% endfor %} - </div> - </div> - - <input type="submit" value="Add to Pangenome"> - </form> - <hr> - <small><a href="https://github.com/adamnovak/bh20-simple-web-uploader">Source</a> · Made for <a href="https://github.com/virtual-biohackathons/covid-19-bh20">COVID-19-BH20</a></small> - <script type="text/javascript"> - let uploadForm = document.getElementById('metadata_upload_form') - let uploadFormSpot = document.getElementById('metadata_upload_form_spot') - let fillForm = document.getElementById('metadata_fill_form') - let fillFormSpot = document.getElementById('metadata_fill_form_spot') - - function setUploadMode() { - // Make the upload form the one in use - uploadFormSpot.appendChild(uploadForm) - fillFormSpot.removeChild(fillForm) - } - - function setFillMode() { - // Make the fillable form the one in use - uploadFormSpot.removeChild(uploadForm) - fillFormSpot.appendChild(fillForm) - } - - function setMode() { - // Pick mode based on radio - if (document.getElementById('metadata_upload').checked) { - setUploadMode() - } else { - setFillMode() - } - } - - // Start in mode appropriate to selected form item - setMode() - </script> - </body> -</html> diff --git a/templates/success.html b/templates/success.html deleted file mode 100644 index 1be7861..0000000 --- a/templates/success.html +++ /dev/null @@ -1,24 +0,0 @@ -<!DOCTYPE html> -<html> - <head> - <meta charset="UTF-8"> - <meta name="viewport" content="width=device-width, initial-scale=1"> - <title>Upload Successful</title> - </head> - <body> - <h1>Upload Successful</h1> - <hr> - <p> - Your files have been uploaded. They should soon appear as part of the <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">Public SARS-CoV-2 Sequence Resource</a>. - </p> - <p> - The upload log was: - </p> - <pre>{{log}}</pre> - <hr> - <p> - <a href="/">Click here to upload more files.</a> - </p> - <hr> - </body> -</html> |