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-rw-r--r--scripts/create_sra_metadata/create_sra_metadata.py8
-rwxr-xr-xscripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py1
2 files changed, 4 insertions, 5 deletions
diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py
index 85d4e9e..f5dc0c8 100644
--- a/scripts/create_sra_metadata/create_sra_metadata.py
+++ b/scripts/create_sra_metadata/create_sra_metadata.py
@@ -290,10 +290,10 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET):
year, month, day = [int(x) for x in info_for_yaml_dict['sample']['collection_date'].split('-')]
collection_date_in_yaml = datetime(year, month, day)
-
- if accession not in not_created_accession_dict:
- not_created_accession_dict[accession] = []
- not_created_accession_dict[accession].append('collection_date too early')
+ if collection_date_in_yaml < min_acceptable_collection_date:
+ if accession not in not_created_accession_dict:
+ not_created_accession_dict[accession] = []
+ not_created_accession_dict[accession].append('collection_date too early')
if 'sample_sequencing_technology' not in info_for_yaml_dict['technology']:
# print(accession_version, ' - technology not found')
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index 1352027..442a9a5 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -409,7 +409,6 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
year, month, day = [int(x) for x in info_for_yaml_dict['sample']['collection_date'].split('-')]
collection_date_in_yaml = datetime(year, month, day)
-
if collection_date_in_yaml < min_acceptable_collection_date:
if accession_version not in not_created_accession_dict:
not_created_accession_dict[accession_version] = []