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-rw-r--r--scripts/upload.cwl13
1 files changed, 13 insertions, 0 deletions
diff --git a/scripts/upload.cwl b/scripts/upload.cwl
new file mode 100644
index 0000000..0fed09a
--- /dev/null
+++ b/scripts/upload.cwl
@@ -0,0 +1,13 @@
+cwlVersion: v1.1
+class: CommandLineTool
+inputs:
+ fasta: File
+ metadata: File
+outputs: []
+requirements:
+ DockerRequirement:
+ dockerPull: bh20-seq-uploader/import
+ NetworkAccess:
+ networkAccess: true
+baseCommand: bh20-seq-uploader
+arguments: [--skip-qc, $(inputs.metadata), $(inputs.fasta)]