diff options
Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/create_sra_metadata/create_sra_metadata.py | 2 | ||||
| -rwxr-xr-x | scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 2 |
2 files changed, 2 insertions, 2 deletions
diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py index 77cdf0d..85d4e9e 100644 --- a/scripts/create_sra_metadata/create_sra_metadata.py +++ b/scripts/create_sra_metadata/create_sra_metadata.py @@ -200,7 +200,7 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET): if VALUE_text_list[1].isalpha(): date_to_write = parse(VALUE_text).strftime('%Y-%m-%d') elif len(VALUE_text_list) == 2: - date_to_write = VALUE_text + '-15' + date_to_write = parse(VALUE_text).strftime('%Y-%m') + '-15' else: if int(VALUE_text) < 2020: date_to_write = "{}-12-15".format(VALUE_text) diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py index 8fbacd1..1352027 100755 --- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py +++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py @@ -358,7 +358,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml) else: info_for_yaml_dict['sample']['additional_collection_information'] = "The 'collection_date' is estimated (the original date was: {})".format(GBQualifier_value_text) elif len(GBQualifier_value_text.split('-')) == 2: - date_to_write += '-15' + date_to_write = parse(GBQualifier_value_text).strftime('%Y-%m') + '-15' if 'additional_collection_information' in info_for_yaml_dict['sample']: info_for_yaml_dict['sample']['additional_collection_information'] += "; The 'collection_date' is estimated (the original date was: {})".format(GBQualifier_value_text) |