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Diffstat (limited to 'scripts/uthsc_samples/template.yaml')
| -rw-r--r-- | scripts/uthsc_samples/template.yaml | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/scripts/uthsc_samples/template.yaml b/scripts/uthsc_samples/template.yaml new file mode 100644 index 0000000..1175ac8 --- /dev/null +++ b/scripts/uthsc_samples/template.yaml @@ -0,0 +1,35 @@ +id: placeholder + +license: + license_type: http://creativecommons.org/licenses/by/4.0/ + title: "$sample_name - $locationx" + attribution_name: "Mariah Taylor, Colleen Jonsson" + attribution_url: https://www.uthsc.edu/medicine/molecular-sciences/faculty-directory/jonsson.php + +host: + host_id: "$sample_id" + host_species: http://purl.obolibrary.org/obo/NCBITaxon_9606 + +sample: + sample_id: "$sample_id" + specimen_source: [http://purl.obolibrary.org/obo/NCIT_C155831] + collection_date: "$collection_date" + collection_location: $location + +virus: + virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049 + virus_strain: "$strain" + +technology: + sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632] + sequence_assembly_method: https://bio.tools/BWA#! + additional_technology_information: Oxford Nanopore MiniIon RNA long reads + +submitter: + authors: [Mariah Taylor, Colleen Jonsson] + submitter_name: [Mariah Taylor, Colleen B. Jonsson, Pjotr Prins] + submitter_address: UTHSC, Memphis, Tennessee 38163, USA + originating_lab: Regional Biocontainment Laboratory, Memphis, TN + provider_sample_id: $sample_id + submitter_sample_id: $sample_id + submitter_orcid: [https://orcid.org/0000-0002-2640-7672,https://orcid.org/0000-0002-8021-9162] |