diff options
Diffstat (limited to 'scripts/update_virtuoso')
| -rwxr-xr-x | scripts/update_virtuoso/check_for_updates.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/scripts/update_virtuoso/check_for_updates.py b/scripts/update_virtuoso/check_for_updates.py index f32d0df..9cb98b4 100755 --- a/scripts/update_virtuoso/check_for_updates.py +++ b/scripts/update_virtuoso/check_for_updates.py @@ -14,6 +14,8 @@ import sys import os.path import subprocess +HOST="http://127.0.0.1:8890/" + assert(len(sys.argv)==4) fn = sys.argv[1] user = sys.argv[2] @@ -36,7 +38,7 @@ def upload(fn): # Upload into Virtuoso using CURL # cmd = "curl -X PUT --digest -u dba:dba -H Content-Type:text/turtle -T metadata.ttl -G http://localhost:8890/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph".split(" ") # print("DELETE "+fn) - # cmd = ("curl --digest --user dba:%s --verbose --url -G http://sparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph -X DELETE" % pwd).split(" ") + # cmd = ("curl --digest --user dba:%s --verbose --url -G http://xsparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph -X DELETE" % pwd).split(" ") print("VALIDATE "+fn) cmd = f"rapper -i turtle {fn}" @@ -48,7 +50,7 @@ def upload(fn): assert(p.returncode == 0) print("UPLOADING "+fn) - cmd = ("curl -X PUT --digest -u dba:%s -H Content-Type:text/turtle -T %s -G http://sparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph/%s" % (pwd, fn, os.path.basename(fn)) ) + cmd = (f"curl -X PUT --digest -u dba:%s -H Content-Type:text/turtle -T %s -G {HOST}/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph/%s" % (pwd, fn, os.path.basename(fn)) ) print(cmd) p = subprocess.Popen(cmd.split(" "),stdout=subprocess.PIPE,stderr=subprocess.PIPE) out, err = p.communicate() @@ -79,7 +81,7 @@ if os.path.isfile(fn): if force or no_cache or stamp != last_modified_str: print("Delete graphs") for graph in ["labels.ttl", "metadata.ttl", "countries.ttl"]: - cmd = ("curl --digest -u dba:%s --verbose --url http://127.0.0.1:8890/sparql-graph-crud-auth?graph=http://covid-19.genenetwork.org/graph/%s -X DELETE" % (pwd, graph)) + cmd = (f"curl --digest -u dba:%s --verbose --url {HOST}/sparql-graph-crud-auth?graph=http://covid-19.genenetwork.org/graph/%s -X DELETE" % (pwd, graph)) print(cmd) p = subprocess.Popen(cmd.split(" ")) output = p.communicate()[0] |