diff options
Diffstat (limited to 'scripts/update_virtuoso')
| -rwxr-xr-x | scripts/update_virtuoso/check_for_updates.py | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/scripts/update_virtuoso/check_for_updates.py b/scripts/update_virtuoso/check_for_updates.py index d5eee14..37dec1a 100755 --- a/scripts/update_virtuoso/check_for_updates.py +++ b/scripts/update_virtuoso/check_for_updates.py @@ -28,12 +28,12 @@ def upload(fn): # print("DELETE "+fn) # cmd = ("curl --digest --user dba:%s --verbose --url -G http://sparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph -X DELETE" % pwd).split(" ") - print("UPLOAD "+fn) - cmd = ("curl -X PUT --digest -u dba:%s -H Content-Type:text/turtle -T %s -G http://sparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph/%s" % (pwd, fn, os.path.basename(fn)) ).split(" ") + print("UPLOADING "+fn) + cmd = ("curl -X PUT --digest -u dba:%s -H Content-Type:text/turtle -T %s -G http://sparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph/%s" % (pwd, fn, os.path.basename(fn)) ) print(cmd) - p = subprocess.Popen(cmd) - output = p.communicate()[0] - print(output) + p = subprocess.Popen(cmd.split(" "),stdout=subprocess.PIPE,stderr=subprocess.PIPE) + out, err = p.communicate() + print(out,err) assert(p.returncode == 0) url = 'https://download.lugli.arvadosapi.com/c=lugli-4zz18-z513nlpqm03hpca/_/mergedmetadata.ttl' @@ -57,7 +57,7 @@ if os.path.isfile(fn): if stamp != last_modified_str: print("Delete graphs") - for graph in ["labels.ttl", "metadata.ttl", "countries.ttl" ""]: + for graph in ["labels.ttl", "metadata.ttl", "countries.ttl"]: cmd = ("curl --digest -u dba:%s --verbose --url http://127.0.0.1:8890/sparql-graph-crud-auth?graph=http://covid-19.genenetwork.org/graph/%s -X DELETE" % (pwd, graph)) print(cmd) p = subprocess.Popen(cmd.split(" ")) |