diff options
Diffstat (limited to 'scripts/download_genbank_data')
| -rwxr-xr-x | scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py index 8ef76e1..8f765d7 100755 --- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py +++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py @@ -412,6 +412,8 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml) not_created_accession_dict[accession_version].append('host_species not found') if len(GBSeq_sequence.text) < min_len_to_count: + if accession_version not in not_created_accession_dict: + not_created_accession_dict[accession_version] = [] not_created_accession_dict[accession_version].append('sequence shorter than {} bp'.format(min_len_to_count)) if accession_version not in not_created_accession_dict: |