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-rw-r--r--scripts/create_sra_metadata/create_sra_metadata.py2
1 files changed, 2 insertions, 0 deletions
diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py
index 2aac0e5..554aea3 100644
--- a/scripts/create_sra_metadata/create_sra_metadata.py
+++ b/scripts/create_sra_metadata/create_sra_metadata.py
@@ -227,6 +227,8 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET):
taxon_id = SAMPLE.find('SAMPLE_NAME').find('TAXON_ID').text
info_for_yaml_dict['virus']['virus_species'] = "http://purl.obolibrary.org/obo/NCBITaxon_"+taxon_id
+ # This script download and prepare data and metadata for samples that will be mapepd againg a referenceT
+ info_for_yaml_dict['technology']['assembly_method'] = 'http://purl.obolibrary.org/obo/GENEPIO_0002028'
EXPERIMENT = EXPERIMENT_PACKAGE.find('EXPERIMENT')
INSTRUMENT_MODEL = [x.text for x in EXPERIMENT.find('PLATFORM').iter('INSTRUMENT_MODEL')][0]