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diff --git a/paper/paper.bib b/paper/paper.bib new file mode 100644 index 0000000..e69de29 --- /dev/null +++ b/paper/paper.bib diff --git a/paper/paper.md b/paper/paper.md new file mode 100644 index 0000000..caa9903 --- /dev/null +++ b/paper/paper.md @@ -0,0 +1,110 @@ +--- +title: 'Public Sequence Resource for COVID-19' +tags: + - Sequencing + - COVID +authors: + - name: Pjotr Prins + orcid: 0000-0002-8021-9162 + affiliation: 1 + - name: Peter Amstutz + orcid: 0000 + affiliation: 2 + - name: Tazro Ohta + orcid: 0000 + affiliation: 3 + - name: Thomas Liener + orcid: 0000 + affiliation: 4 + - name: Erik Garrison + orcid: 0000 + affiliation: 5 + - name: Michael Crusoe + orcid: 0000 + affiliation: 6 + - name: Rutger Vos + orcid: 0000 + affiliation: 7 + - Michael Heuer + orcid: 0000 + affiliation: 8 + +affiliations: + - name: Department of Genetics, Genomics and Informatics, The University of Tennessee Health Science Center, Memphis, TN, USA. + index: 1 + - name: Curii, Boston, USA + index: 2 +date: 11 April 2020 +bibliography: paper.bib +--- + +<!-- + +The paper.md, bibtex and figure file can be found in this repo: + + https://github.com/arvados/bh20-seq-resource + +To modify, please clone the repo. You can generate PDF of the paper by +pasting above link (or yours) with + + https://github.com/biohackrxiv/bhxiv-gen-pdf + +--> + +# Introduction + +As part of the one week COVID-19 Biohackathion 2020, we formed a +working group on creating a public sequence resource for Corona virus. + + +<!-- + + RESULTS! + + For each section below + + State the problem you worked on + Give the state-of-the art/plan + Describe what you have done/results starting with The working group created... + Write a conclusion + Write up any future work + +--> + +## Cloud computing backend + +Peter, Pjotr, MichaelC + +## A command-line sequence uploader + +Peter, Pjotr + +## Metadata uploader + +With Thomas + +## FASTA to GFA workflow + +Michael Heuer + +## BAM to GFA workflow + +Tazro & Erik + +## Phylogeny app + +With Rutger + +## RDF app + +Jerven? + +## EBI app + +? + +# Discussion + +Future work... + +# References |