aboutsummaryrefslogtreecommitdiff
path: root/paper
diff options
context:
space:
mode:
Diffstat (limited to 'paper')
-rw-r--r--paper/paper.bib0
-rw-r--r--paper/paper.md110
2 files changed, 110 insertions, 0 deletions
diff --git a/paper/paper.bib b/paper/paper.bib
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/paper/paper.bib
diff --git a/paper/paper.md b/paper/paper.md
new file mode 100644
index 0000000..caa9903
--- /dev/null
+++ b/paper/paper.md
@@ -0,0 +1,110 @@
+---
+title: 'Public Sequence Resource for COVID-19'
+tags:
+ - Sequencing
+ - COVID
+authors:
+ - name: Pjotr Prins
+ orcid: 0000-0002-8021-9162
+ affiliation: 1
+ - name: Peter Amstutz
+ orcid: 0000
+ affiliation: 2
+ - name: Tazro Ohta
+ orcid: 0000
+ affiliation: 3
+ - name: Thomas Liener
+ orcid: 0000
+ affiliation: 4
+ - name: Erik Garrison
+ orcid: 0000
+ affiliation: 5
+ - name: Michael Crusoe
+ orcid: 0000
+ affiliation: 6
+ - name: Rutger Vos
+ orcid: 0000
+ affiliation: 7
+ - Michael Heuer
+ orcid: 0000
+ affiliation: 8
+
+affiliations:
+ - name: Department of Genetics, Genomics and Informatics, The University of Tennessee Health Science Center, Memphis, TN, USA.
+ index: 1
+ - name: Curii, Boston, USA
+ index: 2
+date: 11 April 2020
+bibliography: paper.bib
+---
+
+<!--
+
+The paper.md, bibtex and figure file can be found in this repo:
+
+ https://github.com/arvados/bh20-seq-resource
+
+To modify, please clone the repo. You can generate PDF of the paper by
+pasting above link (or yours) with
+
+ https://github.com/biohackrxiv/bhxiv-gen-pdf
+
+-->
+
+# Introduction
+
+As part of the one week COVID-19 Biohackathion 2020, we formed a
+working group on creating a public sequence resource for Corona virus.
+
+
+<!--
+
+ RESULTS!
+
+ For each section below
+
+ State the problem you worked on
+ Give the state-of-the art/plan
+ Describe what you have done/results starting with The working group created...
+ Write a conclusion
+ Write up any future work
+
+-->
+
+## Cloud computing backend
+
+Peter, Pjotr, MichaelC
+
+## A command-line sequence uploader
+
+Peter, Pjotr
+
+## Metadata uploader
+
+With Thomas
+
+## FASTA to GFA workflow
+
+Michael Heuer
+
+## BAM to GFA workflow
+
+Tazro & Erik
+
+## Phylogeny app
+
+With Rutger
+
+## RDF app
+
+Jerven?
+
+## EBI app
+
+?
+
+# Discussion
+
+Future work...
+
+# References