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-<!DOCTYPE html>
-<html>
- <head>
- <meta charset="UTF-8">
- <meta name="viewport" content="width=device-width, initial-scale=1">
- <title>Simple Web Uploader for Public SARS-CoV-2 Sequence Resource</title>
- </head>
- <body>
- <h1>Simple Web Uploader for Public SARS-CoV-2 Sequence Resource</h1>
- <hr>
- <p>
- This tool can be used to upload sequenced genomes of SARS-CoV-2 samples to the <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">Public SARS-CoV-2 Sequence Resource</a>. Your uploaded sequence will automatically be processed and incorporated into the public pangenome.
- </p>
- <hr>
- <form action="/submit" method="POST" enctype="multipart/form-data">
- <label for="fasta">Select FASTA file for assembled genome (max 1MB):</label>
- <br>
- <input type="file" id="fasta" name="fasta" accept=".fa,.fasta,.fna">
- <br>
- <label for="metadata">Select JSON metadata file following <a href="https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-schema.yml">this schema</a> (max 1MB):</label>
- <br>
- <input type="file" id="metadata" name="metadata" accept=".json">
- <br>
- <input type="submit" value="Add to Pangenome">
- </form>
- <hr>
- <small><a href="https://github.com/adamnovak/bh20-simple-web-uploader">Source</a> &middot; Made for <a href="https://github.com/virtual-biohackathons/covid-19-bh20">COVID-19-BH20</a></small>
- </body>
-</html>