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Diffstat (limited to 'doc')
| -rw-r--r-- | doc/INSTALL.md | 32 |
1 files changed, 28 insertions, 4 deletions
diff --git a/doc/INSTALL.md b/doc/INSTALL.md index c5c486c..5e9e7e9 100644 --- a/doc/INSTALL.md +++ b/doc/INSTALL.md @@ -4,12 +4,14 @@ Other options for running this tool. ## GNU Guix -Another way to install this tool is inside a [GNU Guix Environment](https://guix.gnu.org/manual/en/html_node/Invoking-guix-environment.html), which can handle installing dependencies for you even when you don't have root access on an Ubuntu system. +### Running the CLI uploader -1. **Set up and enter a container with the necessary dependencies.** After installing Guix as `~/opt/guix/bin/guix`, run: +Another way to install this tool is inside a [GNU Guix Environment](https://guix.gnu.org/manual/en/html_node/Invoking-guix-environment.html), which can handle installing dependencies for you + +1. **Set up and enter a Guix environment with the necessary dependencies.** After installing Guix run: ```sh -~/opt/guix/bin/guix environment -C guix --ad-hoc git python openssl python-pycurl nss-certs +guix environment -C guix --ad-hoc git python openssl python-pycurl nss-certs ``` 2. **Install the tool.** From there you can follow the [user installation instructions](#installation-with-pip3---user). In brief: @@ -27,5 +29,27 @@ arvados-python-client-2.0.1 ciso8601-2.1.3 future-0.18.2 google-api-python-clien 3. Run the tool directly with ```sh -~/opt/guix/bin/guix environment guix --ad-hoc git python openssl python-pycurl nss-certs -- python3 bh20sequploader/main.py +guix environment guix --ad-hoc git python openssl python-pycurl nss-certs -- python3 bh20sequploader/main.py +``` + +### Using the Web Uploader + +To run the web uploader in a GNU Guix environment + +``` +guix environment guix --ad-hoc git python python-flask python-pyyaml nss-certs --network openssl -- env FLASK_APP=bh20simplewebuploader/main.py flask run ``` + +The containerized version looks like + +``` +guix environment -C guix --ad-hoc git python python-flask python-pyyaml nss-certs --network openssl +``` + +and + +``` +env FLASK_APP=bh20simplewebuploader/main.py flask run +``` + +WIP: add gunicorn container |