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Diffstat (limited to 'doc/web/about.org')
| -rw-r--r-- | doc/web/about.org | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/doc/web/about.org b/doc/web/about.org index 8a954bb..29a80bf 100644 --- a/doc/web/about.org +++ b/doc/web/about.org @@ -17,7 +17,10 @@ - [[#how-do-i-change-the-work-flows][How do I change the work flows?]] - [[#how-do-i-change-the-source-code][How do I change the source code?]] - [[#should-i-choose-cc-by-or-cc0][Should I choose CC-BY or CC0?]] + - [[#are-there-also-variant-in-the-RDF-databases]][Are there also variant in the RDF databases?] - [[#how-do-i-deal-with-private-data-and-privacy][How do I deal with private data and privacy?]] + - [[#do-you-have-any-checks-or-concerns-if-human-sequence-accidentally-submitted-to-your-service-as-part-of-a-fastq][Do you have any checks or concerns if human sequence accidentally submitted to your service as part of a fastq?] + - [[#does-PubSeq-support-only-SARS-CoV-2=data]][Does PubSeq support only SARS-CoV-2 data?] - [[#how-do-i-communicate-with-you][How do I communicate with you?]] - [[#who-are-the-sponsors][Who are the sponsors?]] @@ -173,6 +176,12 @@ because we know people like the attribution clause. In all honesty: we prefer both data and software to be free. +* Are there also variant in the RDF databases? * + +We do output a RDF file with the pangenome built in, and you can parse it because it has variants implicitly. + +We are also writing tools to generate VCF files directly from the pangenome. + * How do I deal with private data and privacy? A public sequence resource is about public data. Metadata can refer to @@ -180,6 +189,15 @@ private data. You can use your own (anonymous) identifiers. We also plan to combine identifiers with clinical data stored securely at [[https://redcap-covid19.elixir-luxembourg.org/redcap/][REDCap]]. See the relevant [[https://github.com/arvados/bh20-seq-resource/issues/21][tracker]] for more information and contributing. +* Do you have any checks or concerns if human sequence accidentally submitted to your service as part of a fastq? * + +We are planning to remove reads that match the human reference. + +* Does PubSeq support only SARS-CoV-2 data? * + +To date, PubSeq is a resource specific to SARS-CoV-2, but we are designing it to be able to support other species in the future. + + * How do I communicate with you? We use a [[https://gitter.im/arvados/pubseq?utm_source=share-link&utm_medium=link&utm_campaign=share-link][gitter channel]] you can join. |