diff options
Diffstat (limited to 'doc/blog/using-covid-19-pubseq-part5.org')
| -rw-r--r-- | doc/blog/using-covid-19-pubseq-part5.org | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/doc/blog/using-covid-19-pubseq-part5.org b/doc/blog/using-covid-19-pubseq-part5.org index ec768ed..e260078 100644 --- a/doc/blog/using-covid-19-pubseq-part5.org +++ b/doc/blog/using-covid-19-pubseq-part5.org @@ -17,6 +17,7 @@ - [[#adding-fields-to-the-form][Adding fields to the form]] - [[#testing-the-license-fields][Testing the license fields]] - [[#changing-geo-or-location-field][Changing GEO or location field]] + - [[#relaxing-the-shex-constraint][Relaxing the shex constraint]] * Modify Metadata @@ -169,6 +170,8 @@ Unfortunately the main repositories of SARS-CoV-2 have variable strings of text for location and/or GPS coordinates. For us to support our schema we had to translate all options and this proves expensive. +** Relaxing the shex constraint + So we decide to relax the enforcement of this type of metadata and to allow for a free form string. @@ -188,4 +191,5 @@ format. So, why does the validation step balk when importing GenBank? The problem was in the [[https://github.com/arvados/bh20-seq-resource/blob/46d4b7a3a31f6605f81d43ecd6651d60a5782364/bh20sequploader/bh20seq-shex.rdf#L39][shex check]] for RDF generation. -Removing the wikidata requirement relaxed the imports. +Removing the wikidata requirement relaxed the imports with this +[[https://github.com/arvados/bh20-seq-resource/commit/f776816ee2b1af7ccc84afb494f68a81a51f5a76][patch]]. |