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diff --git a/doc/blog/using-covid-19-pubseq-part4.html b/doc/blog/using-covid-19-pubseq-part4.html index b5a05ca..c975c21 100644 --- a/doc/blog/using-covid-19-pubseq-part4.html +++ b/doc/blog/using-covid-19-pubseq-part4.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"> <head> -<!-- 2020-07-12 Sun 06:24 --> +<!-- 2020-07-17 Fri 05:04 --> <meta http-equiv="Content-Type" content="text/html;charset=utf-8" /> <meta name="viewport" content="width=device-width, initial-scale=1" /> <title>COVID-19 PubSeq (part 4)</title> @@ -161,6 +161,19 @@ .footdef { margin-bottom: 1em; } .figure { padding: 1em; } .figure p { text-align: center; } + .equation-container { + display: table; + text-align: center; + width: 100%; + } + .equation { + vertical-align: middle; + } + .equation-label { + display: table-cell; + text-align: right; + vertical-align: middle; + } .inlinetask { padding: 10px; border: 2px solid gray; @@ -186,7 +199,7 @@ @licstart The following is the entire license notice for the JavaScript code in this tag. -Copyright (C) 2012-2018 Free Software Foundation, Inc. +Copyright (C) 2012-2020 Free Software Foundation, Inc. The JavaScript code in this tag is free software: you can redistribute it and/or modify it under the terms of the GNU @@ -235,15 +248,16 @@ for the JavaScript code in this tag. <h2>Table of Contents</h2> <div id="text-table-of-contents"> <ul> -<li><a href="#org8f8b64a">1. What does this mean?</a></li> -<li><a href="#orgcc7a403">2. Modify Workflow</a></li> +<li><a href="#orgc2ee09f">1. What does this mean?</a></li> +<li><a href="#org0d37881">2. Where can I find the workflows?</a></li> +<li><a href="#orgddb0531">3. Modify Workflow</a></li> </ul> </div> </div> -<div id="outline-container-org8f8b64a" class="outline-2"> -<h2 id="org8f8b64a"><span class="section-number-2">1</span> What does this mean?</h2> +<div id="outline-container-orgc2ee09f" class="outline-2"> +<h2 id="orgc2ee09f"><span class="section-number-2">1</span> What does this mean?</h2> <div class="outline-text-2" id="text-1"> <p> This means that when someone uploads a SARS-CoV-2 sequence using one @@ -253,18 +267,28 @@ which triggers a rerun of our workflows. </div> </div> - -<div id="outline-container-orgcc7a403" class="outline-2"> -<h2 id="orgcc7a403"><span class="section-number-2">2</span> Modify Workflow</h2> +<div id="outline-container-org0d37881" class="outline-2"> +<h2 id="org0d37881"><span class="section-number-2">2</span> Where can I find the workflows?</h2> <div class="outline-text-2" id="text-2"> <p> +Workflows are written in the common workflow language (CWL) and listed +on <a href="https://github.com/arvados/bh20-seq-resource/tree/master/workflows">github</a>. PubSeq being an open project these workflows can be studied +and modified! +</p> +</div> +</div> + +<div id="outline-container-orgddb0531" class="outline-2"> +<h2 id="orgddb0531"><span class="section-number-2">3</span> Modify Workflow</h2> +<div class="outline-text-2" id="text-3"> +<p> <i>Work in progress!</i> </p> </div> </div> </div> <div id="postamble" class="status"> -<hr><small>Created by <a href="http://thebird.nl/">Pjotr Prins</a> (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!<br />Modified 2020-07-12 Sun 06:24</small>. +<hr><small>Created by <a href="http://thebird.nl/">Pjotr Prins</a> (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!<br />Modified 2020-07-17 Fri 01:47</small>. </div> </body> </html> |