diff options
Diffstat (limited to 'bh20simplewebuploader')
| -rw-r--r-- | bh20simplewebuploader/main.py | 19 |
1 files changed, 5 insertions, 14 deletions
diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py index 865af97..1dff207 100644 --- a/bh20simplewebuploader/main.py +++ b/bh20simplewebuploader/main.py @@ -439,12 +439,15 @@ def getAllaccessions(): @app.route('/api/getDetailsForSeq', methods=['GET']) def getDetailsForSeq(): seq_id = request.args.get('seq') - query="""SELECT DISTINCT ?key ?value WHERE {<placeholder> ?x [?key ?value]}""" + query="""SELECT DISTINCT ?key ?key_label ?value WHERE { + <http://arvados.org/keep:00a6af865453564f6a59b3d2c81cc7c1+123/sequence.fasta> ?x [?key ?value] . + OPTIONAL {?key <http://www.w3.org/2000/01/rdf-schema#label> ?key_tmp_label } . + BIND(IF(BOUND(?key_tmp_label),?key_tmp_label, ?key) as ?key_label)}""" query=query.replace("placeholder", seq_id) payload = {'query': query, 'format': 'json'} r = requests.get(baseURL, params=payload) result = r.json()['results']['bindings'] - return jsonify([{'uri': x['key']['value'], + return jsonify([{'uri': x['key']['value'], 'key_label': x['key_label']['value'], 'value': x['value']['value']} for x in result]) @@ -463,18 +466,6 @@ def getSEQCountbytech(): 'tech': x['tech']['value'], 'Label': x['tech_label']['value']} for x in result]) -## Is this one really necessary or should we just use getSEQCountbytech instead? -@app.route('/api/getAvailableTech', methods=['GET']) -def getAvailableTech(): - query="""SELECT distinct ?tech ?tech_label WHERE - {?fasta ?x [<http://purl.obolibrary.org/obo/OBI_0600047> ?tech] - BIND (concat(?tech,"_label") as ?tech_label) - } """ - payload = {'query': query, 'format': 'json'} - r = requests.get(baseURL, params=payload) - result = r.json()['results']['bindings'] - return str(result) - ## List all Sequences/submissions by a given tech, as example e.g. http://purl.obolibrary.org/obo/OBI_0000759 ## Has to be encoded again so should be --> http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBI_0000759 @app.route('/api/getSEQbytech', methods=['GET']) |