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-rw-r--r--bh20simplewebuploader/templates/about.html28
-rw-r--r--bh20simplewebuploader/templates/banner.html7
-rw-r--r--bh20simplewebuploader/templates/blog.html28
-rw-r--r--bh20simplewebuploader/templates/demo-run.html17
-rw-r--r--bh20simplewebuploader/templates/demo.html28
-rw-r--r--bh20simplewebuploader/templates/form.html63
-rw-r--r--bh20simplewebuploader/templates/header.html8
-rw-r--r--bh20simplewebuploader/templates/menu.html11
-rw-r--r--bh20simplewebuploader/templates/search.html9
9 files changed, 141 insertions, 58 deletions
diff --git a/bh20simplewebuploader/templates/about.html b/bh20simplewebuploader/templates/about.html
new file mode 100644
index 0000000..47b68fa
--- /dev/null
+++ b/bh20simplewebuploader/templates/about.html
@@ -0,0 +1,28 @@
+<!DOCTYPE html>
+<html>
+ {% include 'header.html' %}
+ <body>
+ {% include 'banner.html' %}
+ {% include 'menu.html' %}
+
+ WIP
+
+ <script type="text/javascript">
+ let scriptRoot = {{ request.script_root|tojson|safe }}; // examples
+
+ document.addEventListener("DOMContentLoaded", function(){
+ var count = fetch("/api/getCount")
+ .then((resp) => resp.json())
+ .then(function (data) {
+ count = data["sequences"];
+ console.log(count);
+ span = document.getElementById("Counter");
+ txt = document.createTextNode(count);
+ span.appendChild(txt);
+ });
+ });
+
+ </script>
+ </body>
+
+</html>
diff --git a/bh20simplewebuploader/templates/banner.html b/bh20simplewebuploader/templates/banner.html
new file mode 100644
index 0000000..3e2ee9d
--- /dev/null
+++ b/bh20simplewebuploader/templates/banner.html
@@ -0,0 +1,7 @@
+ <section class="header">
+ <div class="logo"><a href="http://covid-19.genenetwork.org/"><img src="static/image/coronasmallcomp.gif" width="150" title="COVID-19 image by Tyler Morgan-Wall"></a></div>
+ <h1>Web uploader for Public SARS-CoV-2 Sequence Resource</h1>
+
+ <p>Database contains <span id="Counter"></span> public sequences!</p>
+
+ </section>
diff --git a/bh20simplewebuploader/templates/blog.html b/bh20simplewebuploader/templates/blog.html
new file mode 100644
index 0000000..47b68fa
--- /dev/null
+++ b/bh20simplewebuploader/templates/blog.html
@@ -0,0 +1,28 @@
+<!DOCTYPE html>
+<html>
+ {% include 'header.html' %}
+ <body>
+ {% include 'banner.html' %}
+ {% include 'menu.html' %}
+
+ WIP
+
+ <script type="text/javascript">
+ let scriptRoot = {{ request.script_root|tojson|safe }}; // examples
+
+ document.addEventListener("DOMContentLoaded", function(){
+ var count = fetch("/api/getCount")
+ .then((resp) => resp.json())
+ .then(function (data) {
+ count = data["sequences"];
+ console.log(count);
+ span = document.getElementById("Counter");
+ txt = document.createTextNode(count);
+ span.appendChild(txt);
+ });
+ });
+
+ </script>
+ </body>
+
+</html>
diff --git a/bh20simplewebuploader/templates/demo-run.html b/bh20simplewebuploader/templates/demo-run.html
new file mode 100644
index 0000000..7f29185
--- /dev/null
+++ b/bh20simplewebuploader/templates/demo-run.html
@@ -0,0 +1,17 @@
+ <section class="search-section">
+ <div class="filter-options" action="#">
+ <p>[Demo] Display content sequences by: </p>
+
+ <div>
+ <button class="button" onclick="fetchSEQBySpecimen()">Specimen source</button>
+ <button class="button" onclick="fetchSEQByLocation()">Location</button>
+ <button class="button" onclick="fetchSEQByTech()">Sequencer</button>
+ <button class="button" onclick="fetchAllaccessions()">All accessions</button>
+ </div>
+
+ </div>
+ <div id="loader" class="loader invisible"></div>
+
+ <section id="results" class="invisible">
+ <pre><code id="json"></code></pre>
+ </section>
diff --git a/bh20simplewebuploader/templates/demo.html b/bh20simplewebuploader/templates/demo.html
new file mode 100644
index 0000000..2137f59
--- /dev/null
+++ b/bh20simplewebuploader/templates/demo.html
@@ -0,0 +1,28 @@
+<!DOCTYPE html>
+<html>
+ {% include 'header.html' %}
+ <body>
+ {% include 'banner.html' %}
+ {% include 'menu.html' %}
+ <!-- {% include 'search.html' %} -->
+ {% include 'demo-run.html' %}
+
+ <script type="text/javascript">
+ let scriptRoot = {{ request.script_root|tojson|safe }}; // examples
+
+ document.addEventListener("DOMContentLoaded", function(){
+ var count = fetch("/api/getCount")
+ .then((resp) => resp.json())
+ .then(function (data) {
+ count = data["sequences"];
+ console.log(count);
+ span = document.getElementById("Counter");
+ txt = document.createTextNode(count);
+ span.appendChild(txt);
+ });
+ });
+
+ </script>
+ </body>
+
+</html>
diff --git a/bh20simplewebuploader/templates/form.html b/bh20simplewebuploader/templates/form.html
index 819d9c3..2c0b5e7 100644
--- a/bh20simplewebuploader/templates/form.html
+++ b/bh20simplewebuploader/templates/form.html
@@ -1,62 +1,9 @@
<!DOCTYPE html>
<html>
- <head>
- <meta charset="UTF-8">
- <link href="https://fonts.googleapis.com/css2?family=Inter:wght@100;200;300;400;500;600;700;800;900&display=swap" rel="stylesheet">
- <link href="/static/main.css" rel="stylesheet" type="text/css">
- <meta name="viewport" content="width=device-width, initial-scale=1">
- <title>Web uploader for Public SARS-CoV-2 Sequence Resource</title>
- <script type="text/javascript" src="/static/main.js"></script>
- </head>
+ {% include 'header.html' %}
<body>
- <section class="header">
- <div class="logo"><a href="http://covid-19.genenetwork.org/"><img src="static/image/coronasmallcomp.gif" width="150" title="COVID-19 image by Tyler Morgan-Wall"></a></div>
- <h1>Web uploader for Public SARS-CoV-2 Sequence Resource</h1>
-
- <p>Database contains <span id="Counter"></span> public sequences!</p>
-
- </section>
-
- <section class="menu">
- <div class="topnav" id="myTopnav">
- <a href="/" class="active">COVID-19</a>
- <a href="/demo">DEMO</a>
- <a href="/blog">BLOG</a>
- <a href="/about">ABOUT</a>
- <a href="javascript:void(0);" class="icon" onclick="myFunction()">
- <i class="fa fa-bars"></i>
- </a>
- </div>
- </section>
-
- <section class="search-section">
- <div class="filter-options" action="#">
- <p>[Demo] Display content sequences by: </p>
-
- <div>
- <button class="button" onclick="fetchSEQBySpecimen()">Specimen source</button>
- <button class="button" onclick="fetchSEQByLocation()">Location</button>
- <button class="button" onclick="fetchSEQByTech()">Sequencer</button>
- <button class="button" onclick="fetchAllaccessions()">All accessions</button>
- </div>
-
- </div>
-
- <div class="search">
- <input id="search-input" id="global-search" type="search" placeholder="FASTA uri" required>
- <button class="button search-button" type="submit" onclick="search()">
- <span class="icon ion-search">
- <span class="sr-only">Search</span>
- </span>
- </button>
- </div>
- </section>
-
- <div id="loader" class="loader invisible"></div>
-
- <section id="results" class="invisible">
- <pre><code id="json"></code></pre>
- </section>
+ {% include 'banner.html' %}
+ {% include 'menu.html' %}
<section>
<form action="/submit" method="POST" enctype="multipart/form-data" id="main_form" class="grid-container">
@@ -215,7 +162,7 @@
<div class="sponsorimg">
<a href="https://uthsc.edu/"><img src="static/image/UTHSC-primary-stacked-logo-4c.png"></a>
</div>
- </div>
+ </div>
</div>
<div class="footer">
<!-- Sponsors -->
@@ -230,7 +177,7 @@
</div>
<script type="text/javascript">
- let scriptRoot = {{ request.script_root|tojson|safe }};
+ // let scriptRoot = {{ request.script_root|tojson|safe }};
let uploadForm = document.getElementById('metadata_upload_form')
let uploadFormSpot = document.getElementById('metadata_upload_form_spot')
let fillForm = document.getElementById('metadata_fill_form')
diff --git a/bh20simplewebuploader/templates/header.html b/bh20simplewebuploader/templates/header.html
new file mode 100644
index 0000000..0c06f62
--- /dev/null
+++ b/bh20simplewebuploader/templates/header.html
@@ -0,0 +1,8 @@
+ <head>
+ <meta charset="UTF-8">
+ <link href="https://fonts.googleapis.com/css2?family=Inter:wght@100;200;300;400;500;600;700;800;900&display=swap" rel="stylesheet">
+ <link href="/static/main.css" rel="stylesheet" type="text/css">
+ <meta name="viewport" content="width=device-width, initial-scale=1">
+ <title>Web uploader for Public SARS-CoV-2 Sequence Resource</title>
+ <script type="text/javascript" src="/static/main.js"></script>
+ </head>
diff --git a/bh20simplewebuploader/templates/menu.html b/bh20simplewebuploader/templates/menu.html
new file mode 100644
index 0000000..55bb1c4
--- /dev/null
+++ b/bh20simplewebuploader/templates/menu.html
@@ -0,0 +1,11 @@
+<section class="menu">
+ <div class="topnav" id="myTopnav">
+ <a href="/" class="{{ 'active' if menu=='HOME' }}">COVID-19</a>
+ <a href="/demo" class="{{ 'active' if menu=='DEMO' }}">DEMO</a>
+ <a href="/blog" class="{{ 'active' if menu=='BLOG' }}">BLOG</a>
+ <a href="/about" class="{{ 'active' if menu=='ABOUT' }}">ABOUT</a>
+ <a href="javascript:void(0);" class="icon" onclick="myFunction()">
+ <i class="fa fa-bars"></i>
+ </a>
+ </div>
+</section>
diff --git a/bh20simplewebuploader/templates/search.html b/bh20simplewebuploader/templates/search.html
new file mode 100644
index 0000000..6651c0f
--- /dev/null
+++ b/bh20simplewebuploader/templates/search.html
@@ -0,0 +1,9 @@
+ <div class="search">
+ <input id="search-input" id="global-search" type="search" placeholder="FASTA uri" required>
+ <button class="button search-button" type="submit" onclick="search()">
+ <span class="icon ion-search">
+ <span class="sr-only">Search</span>
+ </span>
+ </button>
+ </div>
+ </section>