diff options
Diffstat (limited to 'bh20simplewebuploader/templates')
| -rw-r--r-- | bh20simplewebuploader/templates/banner.html | 2 | ||||
| -rw-r--r-- | bh20simplewebuploader/templates/blurb.html | 13 | ||||
| -rw-r--r-- | bh20simplewebuploader/templates/footer.html | 2 | ||||
| -rw-r--r-- | bh20simplewebuploader/templates/home.html | 78 | ||||
| -rw-r--r-- | bh20simplewebuploader/templates/menu.html | 1 |
5 files changed, 58 insertions, 38 deletions
diff --git a/bh20simplewebuploader/templates/banner.html b/bh20simplewebuploader/templates/banner.html index 8f2b09a..32db983 100644 --- a/bh20simplewebuploader/templates/banner.html +++ b/bh20simplewebuploader/templates/banner.html @@ -2,6 +2,6 @@ <div class="logo"><a href="http://covid-19.genenetwork.org/"><img src="static/image/coronasmallcomp.gif" width="150" title="COVID-19 image by Tyler Morgan-Wall"></a></div> <h1>COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource</h1> - <p>Database contains <span id="Counter"></span> public sequences!</p> + <p><span id="Counter"></span> public sequences ready for <a href="/download">download</a>!</p> </section> diff --git a/bh20simplewebuploader/templates/blurb.html b/bh20simplewebuploader/templates/blurb.html index 8b65afa..e58bf78 100644 --- a/bh20simplewebuploader/templates/blurb.html +++ b/bh20simplewebuploader/templates/blurb.html @@ -6,7 +6,15 @@ virus strains. PubSeq allows anyone to upload sequence material in the form of FASTA or fastq files with accompanying metadata through a web interface or REST API. - +</p> +<p> + PubSeq accepts sequence material from all sources (notably in FASTA + format). PubSeq also provides specific workflows for Oxford Nanopore + analysis in FASTQ format. If you need help analysing FAST5 or FASTQ + data, feel free to <a href="/contact">contact us</a>! Also for + commercial support and Cloud pipelines you can reach out to us. +</p> +<p> COVID-19 PubSeq is also a repository for sequences with a low barrier to entry for uploading sequence data using best practices, including <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR @@ -14,7 +22,8 @@ standards and, perhaps most importantly, providing standardised workflows that get triggered on upload, so that results are immediately available in standardised data formats. - +</p> +<p> Your uploaded sequence will automatically be processed and incorporated into the public pangenome with metadata using worklows from the High Performance Open Biology Lab diff --git a/bh20simplewebuploader/templates/footer.html b/bh20simplewebuploader/templates/footer.html index 3a405de..f78e8bf 100644 --- a/bh20simplewebuploader/templates/footer.html +++ b/bh20simplewebuploader/templates/footer.html @@ -19,7 +19,7 @@ <a href="static/image/BCC2020_AndreaGuarracino_COVID19PubSeq_Poster.pdf"> <img src="static/image/BCC2020_AndreaGuarracino_COVID19PubSeq_Poster.png" alt="BCC2020 COVID19 PubSeq Poster"/> </a> - <h3>SPONSORS</h3> + <h3>OUR SPONSORS</h3> <div class="sponsorimg"> <a href="https://github.com/virtual-biohackathons/covid-19-bh20"> <img src="static/image/covid19biohackathon.png"></a> diff --git a/bh20simplewebuploader/templates/home.html b/bh20simplewebuploader/templates/home.html index bede611..367f6e2 100644 --- a/bh20simplewebuploader/templates/home.html +++ b/bh20simplewebuploader/templates/home.html @@ -8,40 +8,50 @@ <section> <div class="intro"> - <p> - Make your sequence - data <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR</a>. Upload - your SARS-CoV-2 sequence (FASTA or FASTQ - formats) with metadata (JSONLD) to - the <a href="/about">public sequence - resource</a>. The upload will trigger a - recompute with all available sequences into a - Pangenome available for - <a href="/download">download</a>! - </p> - <p> - Your uploaded sequence will automatically be - processed and incorporated into the public - pangenome with metadata using worklows from - the High Performance Open Biology Lab - defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All - data is published under - a <a href="https://creativecommons.org/licenses/by/4.0/">Creative - Commons license</a> You can take the published - (GFA/RDF/FASTA) data and store it in a triple - store for further processing. Clinical - data can be stored - securely - at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>. - </p> - <p> - Note that form fields contain - web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">ontology - URI's</a> - for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a> - and machine readable metadata. For examples of - use, see the <a href="/blog">BLOG</a>. - </p> + + <p> + COVID-19 PubSeq is a free and open online + bioinformatics public sequence resource with + on-the-fly analysis of sequenced SARS-CoV-2 + samples that allows for a quick turnaround in + identification of new virus strains. PubSeq allows + anyone to upload sequence material in the form of + FASTA or fastq files with accompanying metadata + through the <a href="/upload">web interface</a> or <a href="/apidoc">REST API</a>. + </p> + <p> + Make your sequence + data <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR</a>. Upload + your SARS-CoV-2 sequence (FASTA or FASTQ formats) + with simple metadata (JSONLD) to + the <a href="/about">public sequence + resource</a>. The upload will trigger a recompute + with all available sequences into a Pangenome + available for + <a href="/download">download</a>! + </p> + <p> + Your uploaded sequence will automatically be + processed and incorporated into the public + pangenome with metadata using worklows from the + High Performance Open Biology Lab + defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All + data is published under + a <a href="https://creativecommons.org/licenses/by/4.0/">Creative + Commons license</a> You can take the published + (GFA/RDF/FASTA) data and store it in a triple + store for further processing. Clinical data can + be stored securely + at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>. + </p> + <p> + Note that form fields contain + web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">ontology + URI's</a> + for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a> + and machine readable metadata. For examples of + use, see the <a href="/blog">BLOG</a>. + </p> </div> </section> diff --git a/bh20simplewebuploader/templates/menu.html b/bh20simplewebuploader/templates/menu.html index d408171..5d5fdc8 100644 --- a/bh20simplewebuploader/templates/menu.html +++ b/bh20simplewebuploader/templates/menu.html @@ -8,6 +8,7 @@ <a href="/export" class="{{ 'active' if menu=='EXPORT' }}">EXPORT</a> <a href="/blog" class="{{ 'active' if menu=='BLOG' }}">BLOG</a> <a href="/about" class="{{ 'active' if menu=='ABOUT' }}">ABOUT</a> + <a href="/contact" class="{{ 'active' if menu=='CONTACT' }}">CONTACT</a> <a href="javascript:void(0);" class="icon" onclick="myFunction()"> <i class="fa fa-bars"></i> </a> |