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diff --git a/bh20simplewebuploader/templates/home.html b/bh20simplewebuploader/templates/home.html index bede611..cfc3506 100644 --- a/bh20simplewebuploader/templates/home.html +++ b/bh20simplewebuploader/templates/home.html @@ -8,47 +8,67 @@ <section> <div class="intro"> - <p> - Make your sequence - data <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR</a>. Upload - your SARS-CoV-2 sequence (FASTA or FASTQ - formats) with metadata (JSONLD) to - the <a href="/about">public sequence - resource</a>. The upload will trigger a - recompute with all available sequences into a - Pangenome available for - <a href="/download">download</a>! - </p> - <p> - Your uploaded sequence will automatically be - processed and incorporated into the public - pangenome with metadata using worklows from - the High Performance Open Biology Lab - defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All - data is published under - a <a href="https://creativecommons.org/licenses/by/4.0/">Creative - Commons license</a> You can take the published - (GFA/RDF/FASTA) data and store it in a triple - store for further processing. Clinical - data can be stored - securely - at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>. - </p> - <p> - Note that form fields contain - web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">ontology - URI's</a> - for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a> - and machine readable metadata. For examples of - use, see the <a href="/blog">BLOG</a>. - </p> - </div> - </section> + <p> + COVID-19 PubSeq is a free and open online + bioinformatics public sequence resource with + on-the-fly analysis of + sequenced <a href="https://pubmed.ncbi.nlm.nih.gov/?term=sars-cov-2&sort=date">SARS-CoV-2</a> + samples that allows for a quick turnaround in + identification of new virus strains. PubSeq allows + anyone to upload sequence material in the form of + FASTA or FASTQ files with accompanying metadata + through the <a href="/upload">web interface</a> + or <a href="/apidoc">REST API</a>. For more + information see the <a href="/about">FAQ!</a>. + </p> <section id="map_view" class="map"> <div id="mapid"></div> </section> + <a href="https://projectredcap.org/"><img class="img-right" src="static/image/REDCap.png" /></a> + <p> + Make your sequence + data <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR</a>. Upload + your SARS-CoV-2 sequence (FASTA or FASTQ formats) + with simple metadata (JSONLD) to + the <a href="/about">public sequence + resource</a>. The upload will trigger a recompute + with all available sequences into a Pangenome + available for + <a href="/download">download</a>! + </p> + <p> + Your uploaded sequence will automatically be + processed and incorporated into the public + pangenome with metadata using worklows from the + High Performance Open Biology Lab + defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All + data is published under + a <a href="https://creativecommons.org/licenses/by/4.0/">Creative + Commons license</a> You can take the published + (GFA/RDF/FASTA) data and store it in a triple + store for further processing. + Clinical data can + be stored securely + at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>. + </p> + <a href="https://nanoporetech.com/"><img class="img-right" src="static/image/oxford-nanopore2.jpg" /></a> + <p> + We give special attention to workflows for the <a href="https://nanoporetech.com/">Oxford Nanopore</a> - see <a href="https://pubmed.ncbi.nlm.nih.gov/?term=sars-cov-2+nanopore&sort=date">pubmed</a> - because it offers an affordable platform that is great + for SARS-CoV-2 sequencing. + </p> + <p> + Note that form fields contain + web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">ontology + URI's</a> + for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a> + and machine readable metadata. For examples of + use, see the <a href="/blog">BLOG</a>. + </p> + </div> + </section> + {% include 'footer.html' %} |