diff options
Diffstat (limited to 'bh20simplewebuploader/main.py')
-rw-r--r-- | bh20simplewebuploader/main.py | 17 |
1 files changed, 10 insertions, 7 deletions
diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py index 1a441f0..2aebe80 100644 --- a/bh20simplewebuploader/main.py +++ b/bh20simplewebuploader/main.py @@ -451,8 +451,9 @@ def getDetailsForSeq(): @app.route('/api/getSEQCountbytech', methods=['GET']) def getSEQCountbytech(): query="""SELECT ?tech ?tech_label (count(?fasta) as ?fastaCount) WHERE - {?fasta ?x [<http://purl.obolibrary.org/obo/OBI_0600047> ?tech] - BIND (concat(?tech,"_label") as ?tech_label)} + {?fasta ?x [<http://purl.obolibrary.org/obo/OBI_0600047> ?tech] . + OPTIONAL {?tech <http://www.w3.org/2000/01/rdf-schema#label> ?tech_tmp_label } . + BIND(IF(BOUND(?tech_tmp_label), ?tech_tmp_label,?tech) as ?tech_label)} GROUP BY ?tech ?tech_label ORDER BY DESC (?fastaCount) """ payload = {'query': query, 'format': 'json'} @@ -505,8 +506,9 @@ def getSEQbyLocation(): @app.route('/api/getSEQCountbyLocation', methods=['GET']) def getSEQCountbyLocation(): query="""SELECT ?geoLocation ?geoLocation_label (count(?fasta) as ?fastaCount) WHERE - {?fasta ?x [<http://purl.obolibrary.org/obo/GAZ_00000448> ?geoLocation] - BIND (concat(?geoLocation,"_label") as ?geoLocation_label)} + {?fasta ?x [<http://purl.obolibrary.org/obo/GAZ_00000448> ?geoLocation] . + Optional {?geoLocation <http://www.w3.org/2000/01/rdf-schema#label> ?geoLocation_tmp_label} + BIND(IF(BOUND(?geoLocation_tmp_label), ?geoLocation_tmp_label, ?geoLocation) as ?geoLocation_label)} GROUP BY ?geoLocation ?geoLocation_label ORDER BY DESC (?fastaCount) """ payload = {'query': query, 'format': 'json'} @@ -521,9 +523,10 @@ def getSEQCountbyLocation(): def getSEQCountbySpecimenSource(): query="""SELECT ?specimen_source ?specimen_source_label (count(?fasta) as ?fastaCount) WHERE {?fasta ?x [<http://purl.obolibrary.org/obo/OBI_0001479> ?specimen_source] - BIND (concat(?specimen_source,"_label") as ?specimen_source_label)} - GROUP BY ?specimen_source ?specimen_source_label - ORDER BY DESC (?fastaCount) + Optional { ?specimen_source <http://www.w3.org/2000/01/rdf-schema#label> ?specimen_source_tmp_label} + BIND(IF(BOUND(?specimen_source_tmp_label), ?specimen_source_tmp_label ,?specimen_source) as ?specimen_source_label)} + GROUP BY ?specimen_source ?specimen_source_label + ORDER BY DESC (?fastaCount) """ payload = {'query': query, 'format': 'json'} r = requests.get(baseURL, params=payload) |