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Diffstat (limited to 'bh20simplewebuploader/main.py')
-rw-r--r-- | bh20simplewebuploader/main.py | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py index 1dff207..0ba43fd 100644 --- a/bh20simplewebuploader/main.py +++ b/bh20simplewebuploader/main.py @@ -424,6 +424,23 @@ def receive_files(): ## but most likley you don't want to touch the queries, Cheers. baseURL='http://sparql.genenetwork.org/sparql/' +@app.route('/api/getCount', methods=['GET']) +def getCount(): + query=""" +PREFIX pubseq: <http://biohackathon.org/bh20-seq-schema#MainSchema/> +select (COUNT(distinct ?dataset) as ?num) +{ + ?dataset pubseq:submitter ?id . + ?id ?p ?submitter +} +""" + payload = {'query': query, 'format': 'json'} + r = requests.get(baseURL, params=payload) + result = r.json()['results']['bindings'] + # [{'num': {'type': 'typed-literal', 'datatype': 'http://www.w3.org/2001/XMLSchema#integer', 'value': '1352'}}] + # print(result, file=sys.stderr) + return jsonify({'sequences': int(result[0]["num"]["value"])}) + @app.route('/api/getAllaccessions', methods=['GET']) def getAllaccessions(): query="""SELECT DISTINCT ?fasta ?value WHERE {?fasta ?x[ <http://edamontology.org/data_2091> ?value ]}""" |