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-rw-r--r--bh20sequploader/qc_fasta.py4
1 files changed, 1 insertions, 3 deletions
diff --git a/bh20sequploader/qc_fasta.py b/bh20sequploader/qc_fasta.py
index 37eb4e8..0c7e16d 100644
--- a/bh20sequploader/qc_fasta.py
+++ b/bh20sequploader/qc_fasta.py
@@ -84,10 +84,8 @@ def qc_fasta(arg_sequence, check_with_clustalw=True):
except Exception as e:
logging.warn("QC against reference sequence using 'minimap2': %s", e, exc_info=e)
- if similarity and similarity < 70.0:
+ if similarity < 70.0:
raise ValueError("QC fail: alignment to reference was less than 70%% (was %2.2f%%)" % (similarity))
- if similarity == 0:
- raise ValueError("QC fail")
return ("sequence.fasta"+gz, seqlabel)
elif seq_type == "text/fastq":