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-rw-r--r--bh20sequploader/bh20seq-schema.yml18
1 files changed, 9 insertions, 9 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index efc60a3..57f3b3d 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -18,7 +18,7 @@ $graph:
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000532
_type: "@id"
- identity: true
+ noLinkCheck: true
host_id:
doc: Identifer for the host. If you submit multiple samples from the same host, use the same host_id for those samples
type: string?
@@ -30,7 +30,7 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000047
_type: "@id"
- identity: true
+ noLinkCheck: true
host_age:
doc: Age of the host as number (e.g. 50)
type: int?
@@ -42,7 +42,7 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/NCIT_C42574
_type: "@id"
- identity: true
+ noLinkCheck: true
host_health_status:
doc: A condition or state at a particular time
type: string?
@@ -77,7 +77,7 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/GAZ_00000448
_type: "@id"
- identity: true
+ noLinkCheck: true
collector_name:
doc: Name of the person that took the sample
type: string?
@@ -94,7 +94,7 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001479
_type: "@id"
- identity: true
+ noLinkCheck: true
specimen_source2:
doc: Method how the specimen was derived as NCIT IRI, e.g. http://purl.obolibrary.org/obo/NCIT_C155835 (=throat swabb)
type: string?
@@ -131,7 +131,7 @@ $graph:
jsonldPredicate:
_id: http://edamontology.org/data_1875
_type: "@id"
- identity: true
+ noLinkCheck: true
virus_strain:
doc: Name of the virus strain
type: string?
@@ -147,14 +147,14 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0600047
_type: "@id"
- identity: true
+ noLinkCheck: true
sample_sequencing_technology2:
doc: Technology that was used to sequence this sample (e.g Sanger, Nanopor MiniION)
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0600047
_type: "@id"
- identity: true
+ noLinkCheck: true
sequence_assembly_method:
doc: Protocol which provides instructions on the alignment of sequencing reads to reference genome
type: string?
@@ -223,7 +223,7 @@ $graph:
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000115
_type: "@id"
- identity: true
+ noLinkCheck: true
- name: MainSchema
type: record